Hydra will remain powered up for use during the government shutdown.
The data center will have essential personnel through the shutdown
to maintain the integrity of the IT infrastructure.
Access to Hydra will not be cut off, so users will be able to submit jobs.
Any major failure of the IT infrastructure (hardware or software) is unlikely
to be fixed during the shutdown, hence accessibility to Hydra and its resources
cannot be guaranteed.
Support for Hydra will be limited to urgent matters
please contact SI-HPC-Admin@si.edu during the shutdown.
Hydra has been successfully moved to the new data center and is operational.
Updates are described in detail at the
HPC Wiki 2025 Data Center Move page.
Please take the time needed to read these pages before contacting us for support.
You can view the list of all the available modules:
as an HTML document, or
a plain ASCII text file.
You can also check the bandwidth between
SAO and HDC.
You can select to have this page refreshed every 5m,
20m, or
1hr, this one will auto-refresh every
20m.
Usage
Current snapshot sorted by nodes'
.
Usage vs time, for length=
and user=
highlighted.
As of Wed Oct 15 14:37:03 2025: #CPUs/nodes 5484/74, 0 down. Loads:
head node: 0.94, login nodes: 0.09, 0.02, 0.04, 0.08; NSDs: 0.10, 0.11, 0.11, 9.63, 9.81; licenses: none used.
Queues status: 36 disabled, none need attention, none in error state.
23 users with running jobs (slots/jobs):
Total number of queued jobs/tasks/slots: 10/85/295
56 users have/had running or queued jobs over the past 7 days, 85 over the past 15 days.
113 over the past 30 days.
Click on the tabs to view each section, on the plots to view larger versions.
You can view the current cluster snapshot sorted by name, no. cpu, usage, load
or memory, and
view the past load for 7, or 15, or 30 days as well as highlight a given user by
selecting the corresponding options in the drop down menus.
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This page was last updated on Wednesday, 15-Oct-2025 14:42:25 EDT
with mk-webpage.pl ver. 7.3/1 (Oct 2025/SGK) in 0:57.
Warnings
Oversubscribed Jobs
As of Wed Oct 15 14:37:03 EDT 2025 (0 oversubscribed job)
Inefficient Jobs
As of Wed Oct 15 14:37:04 EDT 2025 (10 inefficient jobs, showing no more than 3 per user)
Total running (PEs/jobs) = 892/142, 10 queued (jobs), showing only inefficient jobs (cpu% < 33% & age > 1h) for all users.
jobID name user age nPEs cpu% queue node taskID
10261684 hifiasm graujh +3:18 80 28.8% uTxlM.rq 93-05
10265214 hifiasm graujh 01:10 60 15.2% uTxlM.rq 76-01
10263932 vitis_cactus_le niez +2:03 30 28.6% mThM.q 65-30
10265186 job_00_kraken2- scottjj 04:13 30 3.5% mThM.q 76-04
10261906 spades_1 santossam +5:03 20 7.8% mThM.q 65-12
10265164 SWSC zhangy 12:47 16 6.2% lThC.q 65-30
10253677 Delphinidae_IQT mcgowenm +7:21 12 8.3% lThM.q 84-01
10259340 antismash lealc +6:05 12 25.9% lThM.q 65-20
10261999 demultiplex.job lealc +5:02 12 8.0% mThC.q 65-28
10265185 SOTEangsdAtlant byerlyp 04:16 5 19.4% lThM.q 64-17
⇒ Equivalent to 226.6 underused CPUs: 277 CPUs used at 18.2% on average.
Nodes with Excess Load
As of Wed Oct 15 14:37:05 EDT 2025 (2 nodes have a high load, offset=1.5)
#slots excess
node #CPUs used load load
-----------------------------------
65-20 64 12 21.4 9.4 * 76-03 192 3 5.9 2.9 *Total excess load = 12.3
As of Wed Oct 15 14:37:05 EDT 2025
1 job waiting for breusingc:
jobID jobName user age nPEs memReqd queue taskID
--------- --------------- ---------------- ------ ---- -------- ------ -------
10265209 AssembleBarcode breusingc 02:43 16 256.0 mThM.q 16-21:1
quota rule resource=value/limit %used
------------------- ------------------------------- ------
max_mem_res_per_user/2 mem_res=2.500T/8.944T 28.0% for breusingc in queue uThM.q
max_hM_slots_per_user/2 slots=160/585 27.4% for breusingc in queue mThM.q
max_slots_per_user/1 slots=160/840 19.0% for breusingc
------------------- ------------------------------- ------
1 job waiting for ggonzale:
jobID jobName user age nPEs memReqd queue taskID
--------- --------------- ---------------- ------ ---- -------- ------ -------
10264180 mea_l2prof_Aura ggonzale 22:25 1 18.0 sThM.q 12909-12979:1
quota rule resource=value/limit %used
------------------- ------------------------------- ------
max_mem_res_per_user/2 mem_res=1.582T/8.944T 17.7% for ggonzale in queue uThM.q
max_slots_per_user/1 slots=90/840 10.7% for ggonzale
max_hM_slots_per_user/1 slots=90/840 10.7% for ggonzale in queue sThM.q
------------------- ------------------------------- ------
8 jobs waiting for jenkinskel (top 5):
jobID jobName user age nPEs memReqd queue taskID
--------- --------------- ---------------- ------ ---- -------- ------ -------
10261924 Full_Matrix_Bay jenkinskel +5:03 16 uThC.q
10261926 Full_Matrix_Bay jenkinskel +5:03 16 uThC.q
10261930 Full_Matrix_Bay jenkinskel +5:03 16 uThC.q
10261931 Full_Matrix_Bay jenkinskel +5:03 16 uThC.q
10261932 Full_Matrix_Bay jenkinskel +5:03 16 uThC.q
quota rule resource=value/limit %used
------------------- ------------------------------- ------
max_hC_slots_per_user/4 slots=136/143 95.1% for jenkinskel in queue uThC.q
max_slots_per_user/1 slots=136/840 16.2% for jenkinskel
max_mem_res_per_user/1 mem_res=16.00G/9.985T 0.2% for jenkinskel in queue uThC.q
------------------- ------------------------------- ------
Overall Quota Usage
quota rule resource=value/limit %used
------------------- ------------------------------- ------
total_mem_res/3 mem_res=2.930T/7.874T 37.2% for * in queue uTxlM.rq
total_mem_res/2 mem_res=7.210T/35.78T 20.2% for * in queue uThM.q
total_slots/1 slots=901/5960 15.1% for *
blast2GO/1 slots=15/110 13.6% for *
total_gpus/1 GPUS=1/8 12.5% for * in queue qgpu.iq
total_mem_res/1 mem_res=426.0G/39.94T 1.0% for * in queue uThC.q
Memory Usage
Reserved Memory, All High-Memory Queues
Select length:
Current Memory Quota Usage
As of Wed Oct 15 14:37:05 EDT 2025
quota rule resource=value/limit %used filter
---------------------------------------------------------------------------------------------------
total_mem_res/1 mem_res=426.0G/39.94T 1.0% for * in queue uThC.q
total_mem_res/2 mem_res=7.210T/35.78T 20.2% for * in queue uThM.q
total_mem_res/3 mem_res=2.930T/7.874T 37.2% for * in queue uTxlM.rq
Current Memory Usage by Compute Node, High Memory Nodes Only
Limit slots for all users together
users * to slots=5960
users * queues sThC.q,lThC.q,mThC.q,uThC.q to slots=5176
users * queues sThM.q,mThM.q,lThM.q,uThM.q to slots=4680
users * queues uTxlM.rq to slots=536
users * queues sTgpu.q,mTgpu.q,lTgpu.q to slots=104
Limit slots/user for all queues
users {*} to slots=840
Limit slots/user for hiMem queues
users {*} queues {sThM.q} to slots=840
users {*} queues {mThM.q} to slots=585
users {*} queues {lThM.q} to slots=390
users {*} queues {uThM.q} to slots=73
Limit slots/user for xlMem restricted queue
users {*} queues {uTxlM.rq} to slots=536
Limit total reserved memory for all users per queue type
users * queues sThC.q,mThC.q,lThC.q,uThC.q to mem_res=40902G
users * queues sThM.q,mThM.q,lThM.q,uThM.q to mem_res=36637G
users * queues uTxlM.rq to mem_res=8063G
Limit reserved memory per user for specific queues
users {*} queues sThC.q,mThC.q,lThC.q,uThC.q to mem_res=10225G
users {*} queues sThM.q,mThM.q,lThM.q,uThM.q to mem_res=9159G
users {*} queues uTxlM.rq to mem_res=8063G
Limit slots/user for interactive (qrsh) queues
users {*} queues {qrsh.iq} to slots=16
Limit GPUs for all users in GPU queues to the avail no of GPUs
users * queues {sTgpu.q,mTgpu.q,lTgpu.q,qgpu.iq} to GPUS=8
Limit GPUs per user in all the GPU queues
users {*} queues sTgpu.q,mTgpu.q,lTgpu.q,qgpu.iq to GPUS=4
Limit GPUs per user in each GPU queues
users {*} queues {sTgpu.q} to GPUS=4
users {*} queues {mTgpu.q} to GPUS=3
users {*} queues {lTgpu.q} to GPUS=2
users {*} queues {qgpu.iq} to GPUS=1
Limit to set aside a slot for blast2GO
users * queues !lTb2g.q hosts {@b2g-hosts} to slots=110
users * queues lTb2g.q hosts {@b2g-hosts} to slots=1
users {*} queues lTb2g.q hosts {@b2g-hosts} to slots=1
Limit total bigtmp concurrent request per user
users {*} to big_tmp=25
Limit total number of idl licenses per user
users {*} to idlrt_license=102
Limit slots for io queue per user
users {*} queues {lTIO.sq} to slots=8
Limit slots for io queue per user
users {*} queues {lTWFM.sq} to slots=2
Limit the number of concurrent jobs per user for some queues
users {*} queues {uTxlM.rq} to no_concurrent_jobs=3
users {*} queues {lTIO.sq} to no_concurrent_jobs=2
users {*} queues {lWFM.sq} to no_concurrent_jobs=1
users {*} queues {qrsh.iq} to no_concurrent_jobs=4
users {*} queues {qgpu.iq} to no_concurrent_jobs=1
Limit slots/user in hiCPU queues
users {*} queues {sThC.q} to slots=840
users {*} queues {mThC.q} to slots=840
users {*} queues {lThC.q} to slots=431
users {*} queues {uThC.q} to slots=143
You can view plots of disk use vs time, for the past 7, 30, or 120 days;
as well as
plots of disk usage by user, or
by device (for the past 90 or 240 days respectively).
Notes
Capacity shows % disk space full and % of inodes used.
When too many small files are written on a disk, the file system can become full because it is
unable to keep track of new files.
The % of inodes should be lower or comparable to the % of disk space used.
If it is much larger, the disk can become unusable before it gets full.