High-Memory Queues

Details on Jobs that Produced a Warning

As of Fri Jul 25 11:07:09 EDT 2025
   jobID.tID  jobName         user           queue  - mem_res  max(vmem) -   vmem     avgmem   cpu    age    eff. nslots
------------------------------------------------------------------------------------------------------------------------
 9015692.13   spades_array.jo collinsa       mThM.q - 400.0G >>   2.914G -   2.914G   2.834G  26.6d   1.7d  99.5%    16/mthread
 9015692.14   spades_array.jo collinsa       mThM.q - 400.0G >>   2.914G -   2.914G   2.834G  26.5d   1.7d  99.5%    16/mthread
 9015692.20   spades_array.jo collinsa       mThM.q - 400.0G >>   3.164G -   3.164G   3.084G  26.4d   1.7d  99.4%    16/mthread
 9015692.45   spades_array.jo collinsa       mThM.q - 400.0G >>   3.664G -   3.664G   3.585G  21.7d   1.4d  99.4%    16/mthread
 9015692.86   spades_array.jo collinsa       mThM.q - 400.0G >> 210.211G -  67.101G  51.075G  12.9d  23.8h  80.9%    16/mthread
 9015692.107  spades_array.jo collinsa       mThM.q - 400.0G >>   4.414G -   3.414G   3.375G  11.3d  17.1h  99.1%    16/mthread
 9015692.124  spades_array.jo collinsa       mThM.q - 400.0G >>   5.445G -   5.445G   5.358G   7.9d  12.0h  99.0%    16/mthread
 9015692.137  spades_array.jo collinsa       mThM.q - 400.0G >>  54.636G -  11.230G  17.168G   3.8d   6.9h  81.3%    16/mthread
 9015692.138  spades_array.jo collinsa       mThM.q - 400.0G >>  45.955G -   9.053G  11.861G   3.8d   6.4h  89.3%    16/mthread
 9015692.139  spades_array.jo collinsa       mThM.q - 400.0G >>  98.550G -   7.513G  11.759G   3.5d   6.2h  83.4%    16/mthread
 9015692.143  spades_array.jo collinsa       mThM.q - 400.0G >> 125.641G - 108.457G  28.616G   2.7d   5.2h  77.5%    16/mthread
 9015692.144  spades_array.jo collinsa       mThM.q - 400.0G >>  61.842G -   9.771G  11.721G   2.8d   4.8h  86.6%    16/mthread
 9015692.146  spades_array.jo collinsa       mThM.q - 400.0G >>  72.922G -  18.330G  26.577G   2.5d   4.5h  83.4%    16/mthread
 9015692.148  spades_array.jo collinsa       mThM.q - 400.0G >>  54.701G -  14.131G  20.177G   2.2d   4.2h  80.2%    16/mthread
 9015692.149  spades_array.jo collinsa       mThM.q - 400.0G >>  28.301G -  24.289G  10.665G   2.4d   3.7h  97.2%    16/mthread
 9015692.150  spades_array.jo collinsa       mThM.q - 400.0G >>  56.428G -  29.410G  11.068G   2.2d   3.6h  91.8%    16/mthread
 9015692.152  spades_array.jo collinsa       mThM.q - 400.0G >>  42.441G -   7.771G  13.024G  34.9h   2.7h  80.3%    16/mthread
 9015692.153  spades_array.jo collinsa       mThM.q - 400.0G >>  42.352G -   1.244G  14.147G  30.4h   2.3h  83.3%    16/mthread
 9015692.154  spades_array.jo collinsa       mThM.q - 400.0G >>   6.945G -   6.195G   6.509G  31.5h   2.1h  94.5%    16/mthread
 9015692.155  spades_array.jo collinsa       mThM.q - 400.0G >>   5.445G -   5.445G   5.249G  25.4h   1.7h  93.3%    16/mthread
 9015692.156  spades_array.jo collinsa       mThM.q - 400.0G >>   2.914G -   2.914G   2.796G  22.5h   1.5h  94.8%    16/mthread
 9015692.157  spades_array.jo collinsa       mThM.q - 400.0G >>  34.597G -  10.758G   3.894G  15.7h   1.1h  90.4%    16/mthread
 9011217.20   metawrap_long_p vohsens        mThM.q - 256.0G >> 131.375G -   0.323G   5.715G  12.4d   7.6d  10.2%    16/mthread
 9011217.26   metawrap_long_p vohsens        mThM.q - 256.0G >> 132.198G -   0.343G   5.552G  11.6d   7.6d   9.6%    16/mthread
 9011217.148  metawrap_long_p vohsens        mThM.q - 256.0G >> 132.865G -   0.405G   5.776G  10.1d   6.6d   9.6%    16/mthread
 9011217.420  metawrap_long_p vohsens        mThM.q - 256.0G >>  31.062G -   0.386G   5.710G   9.6d   5.4d  11.1%    16/mthread
 9011217.496  metawrap_long_p vohsens        mThM.q - 256.0G >>  33.992G -   0.326G   5.527G  10.2d   4.7d  13.5%    16/mthread
 9011217.545  metawrap_long_p vohsens        mThM.q - 256.0G >>  31.317G -   0.343G   5.518G  10.6d   3.8d  17.3%    16/mthread
 9013032.301  alignfasta-ARRA cerqueirat     mThM.q -  16.0G >>   4.443G -   3.932G   3.804G   3.8d   3.8d  99.6%     1
 9013032.354  alignfasta-ARRA cerqueirat     mThM.q -  16.0G >>   5.137G -   5.052G   4.924G   3.8d   3.8d  99.6%     1
 9013032.632  alignfasta-ARRA cerqueirat     mThM.q -  16.0G >>   5.686G -   5.656G   5.498G   3.7d   3.8d  99.6%     1
 9013032.945  alignfasta-ARRA cerqueirat     mThM.q -  16.0G >>   4.578G -   3.405G   3.285G   3.6d   3.6d  99.6%     1
 9013032.1590 alignfasta-ARRA cerqueirat     mThM.q -  16.0G >>   8.413G -   8.269G   8.151G   3.4d   3.4d  99.7%     1
 9013032.1603 alignfasta-ARRA cerqueirat     mThM.q -  16.0G >>  10.131G -  10.066G   9.827G   3.4d   3.4d  99.6%     1
 9013032.1905 alignfasta-ARRA cerqueirat     mThM.q -  16.0G >>   4.869G -   3.588G   3.489G   3.2d   3.2d  99.6%     1
 9013032.2135 alignfasta-ARRA cerqueirat     mThM.q -  16.0G >>   4.602G -   4.571G   4.423G   3.1d   3.1d  99.6%     1
 9013032.2279 alignfasta-ARRA cerqueirat     mThM.q -  16.0G >>   4.539G -   3.548G   3.421G   3.0d   3.1d  99.5%     1
 9013032.2505 alignfasta-ARRA cerqueirat     mThM.q -  16.0G >>   4.748G -   4.718G   4.562G   2.9d   2.9d  99.6%     1
 9013032.2967 alignfasta-ARRA cerqueirat     mThM.q -  16.0G >>   6.212G -   6.039G   5.963G   2.7d   2.7d  99.7%     1
 9013032.2978 alignfasta-ARRA cerqueirat     mThM.q -  16.0G >>   7.846G -   7.734G   7.559G   2.7d   2.7d  99.7%     1
 9013032.2992 alignfasta-ARRA cerqueirat     mThM.q -  16.0G >>   4.498G -   3.795G   3.680G   2.7d   2.7d  99.6%     1
 9012796.1    mf_trimmedreads wirshingh      mThM.q -  72.0G >>  34.390G -   1.653G   2.611G  12.9d   4.0d  36.0%     9/mthread
 9012393.1    uce_spades_conc beckerm        mThM.q -  80.0G >   79.795G -   0.301G  42.391G   5.7d   6.0d   2.4%    40/mthread
 9013156.1    IQTree          bourkeb        mThM.q - 512.0G >>   0.756G -   0.676G   0.658G  25.6d   3.2d  98.7%     8/mthread
 8137841.1    Job_Step5       perezm4        lThM.q - 400.0G >  392.541G - 392.541G 341.616G  59.6d  56.8d  26.2%     4/mthread
 9012335.1    spades          hinckleya      lThM.q -  40.0G >   39.585G -  14.310G   6.679G   2.9d   6.2d  46.0%     1
 9013131.1    nf-blastUnalign hydem2         lThM.q - 500.0G >> 334.890G - 321.617G 295.910G   3.5d   3.3d  21.2%     5/mthread
 9013134.1    nf-blastUnalign hydem2         lThM.q - 500.0G >> 346.939G - 342.536G 301.704G   5.2d   3.3d  31.6%     5/mthread
 9013284.1    phyluce4        vagac          lThM.q - 420.0G >>  59.439G -  35.604G   2.741G  12.2d   3.1d  39.7%    10/mthread
 9013399.1    xvcf13          uribeje        uThM.q - 400.0G >>  49.939G -  34.259G  18.296G  19.1h  19.2h  12.4%     8/mthread
 9013398.1    xvcf12          uribeje        uThM.q - 400.0G >>  54.855G -  34.257G  18.491G  22.6h  22.8h  12.4%     8/mthread
 9013401.1    xvcf14          uribeje        uThM.q - 400.0G >>  57.771G -  34.224G  18.051G  13.7h  13.8h  12.4%     8/mthread
 9013381.1    xvcf1           uribeje        uThM.q - 400.0G >>  53.732G -  35.665G  19.421G   2.8d   2.8d  12.4%     8/mthread
 9013384.1    xvcf2           uribeje        uThM.q - 400.0G >>  43.590G -  30.764G  16.805G   2.8d   2.8d  12.4%     8/mthread
 9083681.1    spades_mugua_q  zhangy         uThM.q - 400.0G >>  56.792G -  31.792G  27.726G   2.1d   9.5h  67.3%     8/mthread
 9013386.1    xvcf3           uribeje        uThM.q - 400.0G >>  60.350G -  21.064G  12.207G   2.8d   2.8d  12.5%     8/mthread
 9013389.1    xvcf5           uribeje        uThM.q - 400.0G >>  33.557G -  21.741G  11.767G   2.7d   2.7d  12.4%     8/mthread

A warning is generated if either: • too much or too little memory is reserved: mem_res versus max(vmem); or • the job efficiency is too low or is too high. Click on the link under the jobID.tID heading to view the job's corresponding graph.


The quantity mem_res is the amount of memory reserved for the job, while max(vmem) is the maximum amount of memory a job has used (so far); to optimize the cluster's memory usage, these two numbers should be similar.


The job efficiency, eff., is the amount of CPU used so far divided by the product of the age by the number of slots. • A low efficiency means that the job is not using all the allocated CPUs (slots); • a value above 100% means that the job is using more CPUs cycles (threads) than the requested number of slots (nslots).

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