High-Memory Queues

Details on Jobs that Produced a Warning

As of Mon May 19 17:57:12 EDT 2025 
   jobID.tID  jobName         user           queue  - mem_res  max(vmem) -   vmem     avgmem   cpu    age    eff. nslots
------------------------------------------------------------------------------------------------------------------------
 8054887.1    trimming        gallego-narb   mThM.q -  24.0G >>   5.369G -   5.368G   5.265G   6.5h   2.5h 256.1%     1
 8032067.1    nf-genMapMap    hydem2         mThM.q -  10.0G <<  13.353G -  13.353G  13.256G   2.2d   6.7h  99.2%     8/mthread
 8030477.1    nf-genMapMap    hydem2         mThM.q -  10.0G <<  13.353G -  13.353G  13.257G   2.3d   6.9h  98.3%     8/mthread
 7829610.1    raxmlPerGene    carlsenm       mThM.q -  10.0G >>   0.234G -   0.176G   0.155G   3.1d   3.1d  99.7%     1
 8030612.1    xsta            uribeje        mThM.q -  20.0G >>   0.131G -   0.127G   0.108G   6.7h   6.9h  24.5%     4/mthread
 7829611.1    raxmlPerGene    carlsenm       mThM.q -  10.0G >>   0.261G -   0.178G   0.157G   3.1d   3.1d  99.9%     1
 8030100.1    xsta            uribeje        mThM.q -  20.0G >>   0.131G -   0.127G   0.109G   6.8h   6.9h  24.4%     4/mthread
 7815819.1    spades_Z005_IUD morrisseyd     mThM.q - 800.0G >>  68.917G -  53.924G  41.283G   3.5d  10.0h  83.8%    10/mthread
 7829551.1    raxmlPerGene    carlsenm       mThM.q -  10.0G >>   0.285G -   0.181G   0.161G   3.1d   3.1d  99.6%     1
 7829607.1    raxmlPerGene    carlsenm       mThM.q -  10.0G >>   0.286G -   0.154G   0.160G   3.0d   3.1d  99.5%     1
 7775736.1    pcangsd_williso figueiroh      mThM.q - 640.0G >> 162.941G - 161.173G 161.410G 154.0d   6.3d  60.9%    40/mthread
 7815821.1    spades_Z096_IUD morrisseyd     mThM.q - 800.0G >>  54.491G -  31.084G  30.198G   1.9d   5.4h  83.9%    10/mthread
 7815820.1    spades_Z041_IUD morrisseyd     mThM.q - 800.0G >>  59.067G -  20.604G  34.015G   1.8d   5.6h  78.0%    10/mthread
 8021126.1    GADMA_model_5po macguigand     mThM.q - 640.0G >> 173.152G - 171.888G  17.287G   2.9d   8.6h  99.4%     8/mthread
 8063149.1    busco2          carrionj       mThM.q - 160.0G >> 113.926G - 105.152G   9.223G   6.5h   1.0h  82.1%     8/mthread
 7829626.1    raxmlPerGene    carlsenm       mThM.q -  10.0G >>   0.279G -   0.192G   0.158G   3.0d   3.1d  99.6%     1
 7813102.1    spades_Z242_IUD morrisseyd     mThM.q - 800.0G >>  63.566G -  15.947G  21.278G   6.8d   5.4d  12.6%    10/mthread
 8030315.1    xsta            uribeje        mThM.q -  20.0G >>   0.130G -   0.127G   0.109G   6.5h   6.9h  23.5%     4/mthread
 8053566.1    repeat_masker   classenc       mThM.q - 500.0G >>  85.238G -  39.880G   6.024G  12.2h   2.8h   9.2%    48/mthread
 7814302.1    raxmlHPC-PTHREA castanedaric   lThM.q -  12.0G <<  18.858G -  18.779G  18.758G  62.7d   5.2d  99.6%    12/mthread
 7814165.1    raxmlHPC-PTHREA castanedaric   lThM.q -  12.0G <<  15.793G -  15.726G  15.706G  63.1d   5.3d  99.6%    12/mthread
 7894402.1    gl_SOTEhighLD   byerlyp        lThM.q -  50.0G >>   3.717G -   3.717G   2.191G  35.5h   1.5d   9.6%    10/mthread
 7894399.1    gl_BRNOhighLD   byerlyp        lThM.q -  50.0G >>   6.690G -   6.690G   4.484G  35.5h   1.5d   9.6%    10/mthread
 8029778.1    raxmlHPC-PTHREA castanedaric   lThM.q -  12.0G >>   8.645G -   8.645G   8.550G   3.5d   7.1h  99.4%    12/mthread
 7894398.1    gl_ROSThighLD   byerlyp        lThM.q -  50.0G >>   4.459G -   4.459G   2.061G  35.8h   1.5d   9.7%    10/mthread
 8029781.1    raxmlHPC-PTHREA castanedaric   lThM.q -  12.0G >>   7.123G -   7.078G   7.018G   3.5d   7.1h  99.3%    12/mthread
 7828238.1    xcramf1         uribeje        uThM.q - 400.0G >>  30.143G -  29.986G  21.811G   4.9d   3.2d  18.9%     8/mthread
 7929224.1    xmarck4         uribeje        uThM.q - 400.0G >>  30.889G -  25.293G  16.427G   2.6d   1.2d  26.2%     8/mthread
 8055423.1    xmarck73        uribeje        uThM.q - 400.0G >>  39.608G -   0.119G  23.092G   6.8h   2.4h  35.2%     8/mthread
 8055413.1    xmarck72        uribeje        uThM.q - 400.0G >>  40.617G -   9.035G  18.716G   6.1h   2.4h  32.0%     8/mthread
 8055444.1    xmarck76        uribeje        uThM.q - 400.0G >>  40.180G -  39.483G  20.515G   7.0h   2.4h  36.4%     8/mthread

A warning is generated if either: • too much or too little memory is reserved: mem_res versus max(vmem); or • the job efficiency is too low or is too high. Click on the link under the jobID.tID heading to view the job's corresponding graph.

The quantity mem_res is the amount of memory reserved for the job, while max(vmem) is the maximum amount of memory a job has used (so far); to optimize the cluster's memory usage, these two numbers should be similar.

The job efficiency, eff., is the amount of CPU used so far divided by the product of the age by the number of slots. • A low efficiency means that the job is not using all the allocated CPUs (slots); • a value above 100% means that the job is using more CPUs cycles (threads) than the requested number of slots (nslots).

This page was last updated on Monday, 19-May-2025 18:01:15 EDT with mk-web-page.pl ver. 7.2/1 (Aug 2024/SGK)