Details on Jobs in the High-Memory Queues that Produced a Warning

Details on Jobs that Produced a Warning

jobID.tID jobName user queue - mem_res max(vmem) - vmem avgmem cpu age eff. nslots ------------------------------------------------------------------------------------------------------------------------ 14417204.1 MOS_CorAus jhora sThM.q - 256.0G << 589.241G - 19.449G 7.059G 2.6d 12.1h 51.6% 10/mthread 14417675.1 nf-modern_align klinsawatw mThM.q - 8.0G << 84.206G - 45.020G 30.549G 2.7d 3.2h 102.2% 20/mthread 14417672.1 nf-modern_align klinsawatw mThM.q - 8.0G << 28.948G - 28.632G 8.196G 2.7d 3.2h 101.3% 20/mthread 14417669.1 nf-modern_align klinsawatw mThM.q - 8.0G << 29.382G - 29.132G 8.448G 2.7d 3.2h 101.2% 20/mthread 14417610.1 nf-repeatModele thomasw2 mThM.q - 16.0G << 69.677G - 6.372G 8.266G 22.9h 6.8h 7.0% 48/mthread 14417448.20 euk-SNP_array johnsonsj mThM.q - 40.0G >> 23.700G - 23.649G 23.580G 17.8h 5.5h 162.2% 2/mthread 14417448.22 euk-SNP_array johnsonsj mThM.q - 40.0G >> 23.472G - 23.445G 23.387G 10.7h 3.7h 143.6% 2/mthread 14417448.23 euk-SNP_array johnsonsj mThM.q - 40.0G >> 23.635G - 23.635G 23.574G 11.5h 3.6h 160.3% 2/mthread 14417202.1 nf-alignSeqs_(1 atkinsonga mThM.q - 320.0G >> 53.577G - 53.243G 11.170G 15.4d 12.1h 76.7% 40/mthread 14417668.1 nf-modern_align klinsawatw mThM.q - 8.0G << 29.257G - 28.320G 8.281G 2.7d 3.2h 100.0% 20/mthread 14417674.1 nf-modern_align klinsawatw mThM.q - 8.0G << 28.339G - 28.007G 7.896G 2.7d 3.2h 99.7% 20/mthread 14417203.1 nf-alignSeqs_(4 atkinsonga mThM.q - 320.0G >> 46.842G - 44.729G 13.017G 18.2d 12.1h 90.6% 40/mthread 14405067.1 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 25.539G - 25.539G 24.956G 4.6d 4.6d 99.8% 1 14405069.3 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 27.673G - 27.673G 26.970G 4.6d 4.6d 99.8% 1 14405075.9 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 19.172G - 19.172G 18.607G 4.6d 4.6d 99.8% 1 14395137.3 earlgrey zhangy lThM.q - 192.0G >> 25.558G - 9.502G 1.120G 103.2d 9.5d 90.9% 12/mthread 14395137.6 earlgrey zhangy lThM.q - 192.0G >> 36.889G - 1.922G 1.121G 108.0d 9.5d 95.2% 12/mthread 14395137.8 earlgrey zhangy lThM.q - 192.0G >> 3.563G - 1.629G 1.041G 109.0d 9.5d 96.1% 12/mthread 14405252.55 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 61.271G - 61.271G 59.721G 4.4d 4.4d 99.7% 1 14405246.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.467G - 49.375G 48.244G 4.4d 4.4d 99.7% 1 14405257.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.464G - 49.464G 48.326G 4.4d 4.4d 99.7% 1 14405104.42 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 17.691G - 17.691G 17.218G 4.6d 4.6d 99.7% 1 14405253.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.742G - 52.742G 51.517G 4.4d 4.4d 99.7% 1 14405241.55 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 61.209G - 61.209G 59.733G 4.4d 4.4d 99.7% 1 14409005.1 phynest_run hinckleya lThM.q - 8.0G >> 3.376G - 3.368G 3.341G 1.6d 1.6d 99.7% 1 14405093.31 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 21.122G - 21.122G 20.420G 4.6d 4.6d 99.7% 1 14405134.78 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 15.827G - 15.827G 15.306G 4.6d 4.6d 99.7% 1 14405258.108 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 57.371G - 57.371G 56.086G 4.4d 4.4d 99.7% 1 14405234.107 CJS_nbraw_nc suttonm lThM.q - 64.0G >> 49.529G - 49.438G 48.330G 4.4d 4.5d 99.7% 1 14405240.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.949G - 64.949G 63.333G 4.4d 4.4d 99.7% 1 14405153.97 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 18.722G - 18.722G 18.174G 4.6d 4.6d 99.7% 1 14405242.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.741G - 52.741G 51.530G 4.4d 4.4d 99.7% 1 14405245.100 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 53.154G - 53.154G 52.007G 4.4d 4.4d 99.7% 1 14405145.89 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 24.489G - 24.489G 23.948G 4.6d 4.6d 99.7% 1 14405273.1 earlgrey zhangy lThM.q - 240.0G > 203.853G - 0.465G 3.182G 15.7d 4.4d 30.1% 12/mthread 14405121.61 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 17.256G - 17.256G 16.775G 4.6d 4.6d 99.6% 1 14405158.103 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 21.920G - 21.920G 21.393G 4.6d 4.6d 99.7% 1 14405142.85 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 26.225G - 26.225G 25.625G 4.6d 4.6d 99.7% 1 14405159.104 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 34.124G - 34.124G 33.282G 4.2d 4.6d 90.8% 1 14405165.110 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 37.120G - 37.120G 36.356G 4.6d 4.6d 99.6% 1 14405250.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.886G - 64.886G 63.415G 4.4d 4.4d 99.7% 1 14405247.108 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 57.371G - 57.371G 56.124G 4.4d 4.4d 99.7% 1 14405256.100 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 53.216G - 53.216G 52.020G 4.4d 4.4d 99.7% 1 14405284.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.866G - 52.866G 51.413G 4.2d 4.2d 99.7% 1 14405288.100 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 53.216G - 53.216G 51.878G 4.2d 4.2d 99.8% 1 14405289.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.531G - 49.437G 48.100G 4.2d 4.2d 99.8% 1 14405281.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.949G - 64.949G 62.814G 4.2d 4.2d 99.8% 1 14405290.108 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 57.433G - 57.433G 55.647G 4.2d 4.2d 99.8% 1 14405283.55 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 61.930G - 61.852G 59.922G 4.2d 4.2d 99.7% 1

A warning is generated if either: • too much or too little memory is reserved: mem_res versus max(vmem); or • the job efficiency is too low or is too high. Click on the link under the jobID.tID heading to view the job's corresponding graph.

The quantity mem_res is the amount of memory reserved for the job, while max(vmem) is the maximum amount of memory a job has used (so far); to optimize the cluster's memory usage, these two numbers should be similar.

The job efficiency, eff., is the amount of CPU used so far divided by the product of the age by the number of slots. • A low efficiency means that the job is not using all the allocated CPUs (slots); • a value above 100% means that the job is using more CPUs cycles (threads) than the requested number of slots (nslots).

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