Hydra-6 Status
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Usage
Current snapshot sorted by nodes' . Usage vs time, for length= and user= highlighted.
As of Mon May 23 10:37:02 2022 : #CPUs/nodes 5216/96, 0 down.
head node; login nodes; NSDs load: 0.37; 0.11; 0.65; 0.12; 0.02; 5.01; 3.79; licenses: none used.
Queues status: 6 disabled, none need attention, none in error state.
30 users with running jobs (slots/jobs):
Current load: 1985.3, #running (slots/jobs): 2,401/735, usage: 46.0%, efficiency: 82.7%
3 users with queued jobs (jobs/tasks/slots):
gonzalezv=1/216/2160 kweskinm=1/249/249 zhangy=4/4/32 Total number of queued jobs/tasks/slots: 6/469/2,441
65 users have/had running or queued jobs over the past 7 days, 75 over the past 15 days. 85 over the past 30 days.
Click on the tabs to view each section, on the plots to view larger versions.
You can view the current cluster snapshot sorted by name, no. cpu, usage, load or memory, and
view the past load for 7, or 15, or 30 days as well as highlight a given user by selecting the corresponding options in the drop down menus.{}
This page was last updated on Monday, 23-May-2022 10:42:22 EDT with mk-webpage.pl ver. 6.1/7 (Jan 2022/SGK) in 1:06. -
Warnings
Oversubscribed Jobs
As of Mon May 23 10:37:03 EDT 2022 (0 oversubscribed job)
Inefficient Jobs
As of Mon May 23 10:37:04 EDT 2022 (69 inefficient jobs, showing no more than 3 per user) Total running (PEs/jobs) = 2401/735, 6 queued (jobs), showing only inefficient jobs (cpu% < 33% & age > 1h) for all users. jobID name user age nPEs cpu% queue node taskID 4662942 repeatmodeler ariasc +4:17 40 3.3% uTxlM.rq 75-02 4662826 RAD4_v2_s3 hartvigi +5:06 24 17.5% lThM.q 81-20 4665220 iqtree liub +1:02 24 17.9% mThC.q 43-05 4662950 pfinder_75perc ranaj +4:13 20 15.9% lThC.q 81-28 4665196 variant_filter_ ranaj +1:20 20 5.2% lThC.q 43-22 4577163 gatb_NMNH-2019- justis +19:05 16 0.7% lThM.q 81-24 4577166 gatb_NMNH-2019- justis +19:04 16 0.5% lThM.q 81-24 4577168 gatb_NMNH-2019- justis +19:03 16 0.4% lThM.q 81-27 4659029 Spades_Phyluce mcgowenm +10:18 12 8.0% mThM.q 65-03 4662977 fastqdump liub +4:08 8 12.2% mThC.q 64-14 4665168 rotinv-i2b-sgk_ sylvain +1:00 8 17.3% mThM.q 75-04 4665170 rotinv-i2b-sgk_ sylvain 23:09 8 16.9% mThM.q 75-04 4665171 rotinv-i2b-sgk_ sylvain 19:00 8 16.2% mThM.q 75-04 (more by sylvain) 4665206 spades_guang zhangy +1:09 8 25.1% uThM.q 81-29 4644916 OB181115_5222 jedelman +19:00 1 0.1% mThC.q 81-18 4644948 OB181115_5254 jedelman +19:00 1 0.1% mThC.q 81-06 4644955 OB181115_5261 jedelman +19:00 1 0.1% mThC.q 81-18 (more by jedelman) ⇒ Equivalent to 293.3 underused CPUs: 325 CPUs used at 9.7% on average. To see them all use: 'q+ -ineff -u jedelman' (49) 'q+ -ineff -u sylvain' (9)
Nodes with Excess Load
As of Mon May 23 10:37:06 EDT 2022 (19 nodes have a high load, offset=1.5) #slots node excess node used #CPUs load load --------------------------------- 43-01 2 0 5.5 3.5 * 43-02 18 0 19.8 1.8 * 43-06 11 0 12.6 1.6 * 43-07 15 0 16.6 1.6 * 43-08 12 0 13.9 1.9 * 43-09 12 0 13.9 1.9 * 43-13 11 0 12.5 1.5 * 43-15 13 0 14.6 1.6 * 43-16 14 0 16.0 2.0 * 43-17 12 0 13.8 1.8 * 43-19 12 0 13.7 1.7 * 43-21 16 0 17.8 1.8 * 43-24 13 0 14.5 1.5 * 64-09 14 0 15.9 1.9 * 64-12 12 0 13.8 1.8 * 64-13 14 0 15.9 1.9 * 75-03 36 0 37.7 1.7 * 75-04 43 0 44.7 1.7 * 93-04 23 0 25.8 2.8 * Total excess load = 36.0
High Memory Jobs
Statistics
User nSlots memory memory vmem maxvmem ratio Name used reserved used used used [TB] resd/maxvm -------------------------------------------------------------------------------------------------- sylvain 193 32.8% 1.8848 27.0% 0.2186 24.3% 1.6982 1.6982 1.1 zhangy 32 5.4% 1.5625 22.4% 0.2876 32.0% 0.0057 0.3577 4.4 santosbe 90 15.3% 0.8789 12.6% 0.0625 6.9% 0.0643 0.0643 13.7 bursellm 72 12.2% 0.5859 8.4% 0.0131 1.5% 0.0782 0.0829 7.1 ariasc 40 6.8% 0.4688 6.7% 0.0055 0.6% 0.0101 0.2352 2.0 justis 48 8.2% 0.3750 5.4% 0.0174 1.9% 0.0246 0.0471 8.0 kistlerl 30 5.1% 0.2930 4.2% 0.0184 2.0% 0.0187 0.0300 9.8 ranaj 9 1.5% 0.1992 2.9% 0.0016 0.2% 0.0026 0.0039 50.5 mcgowenm 12 2.0% 0.1953 2.8% 0.0599 6.7% 0.0032 0.1872 1.0 sossajef 20 3.4% 0.1562 2.2% 0.0485 5.4% 0.0493 0.0493 3.2 koenemannd 4 0.7% 0.1172 1.7% 0.0525 5.8% 0.0534 0.0534 2.2 hartvigi 24 4.1% 0.1172 1.7% 0.0029 0.3% 0.0475 0.1031 1.1 blaimerbb 12 2.0% 0.0938 1.3% 0.0828 9.2% 0.0838 0.0865 1.1 schultzt 2 0.3% 0.0586 0.8% 0.0286 3.2% 0.0288 0.0288 2.0 ================================================================================================== Total 588 6.9863 0.8999 2.1684 3.0277 2.3
Warnings
54 high memory jobs produced a warning:
1 for ariasc 1 for blaimerbb 1 for bursellm 1 for hartvigi 3 for justis 1 for kistlerl 2 for koenemannd 1 for mcgowenm 9 for ranaj 3 for santosbe 2 for schultzt 1 for sossajef 24 for sylvain 4 for zhangyDetails for each job can be found here.
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Breakdown by Queue
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Select length:
Current Usage by Queue
Total Limit Fill factor Efficiency sThC.q=33 mThC.q=454 lThC.q=971 uThC.q=101 1559 4600 33.9% 121.7% sThM.q=0 mThM.q=205 lThM.q=198 uThM.q=43 446 2248 19.8% 210.0% uTxlM.rq=142 142 576 24.7% 55.7% lTb2g.q=0 0 8 0.0% lTIO.sq=0 0 8 0.0% lTgpu.q=0 qgpu.iq=0 0 40 0.0% qrsh.iq=2 2 40 5.0% 1.8% Total: 2149
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Avail Slots/Wait Job(s)
Available Slots
As of Mon May 23 10:37:04 EDT 2022 2274 avail(slots), free(load)=4295.5, unresd(mem)=19309.4G, for hgrp=@hicpu-hosts and minMem=1.0G/slot total(nCPU) 4440 total(mem) 31.1T unused(slots) 2206 unused(load) 4405.6 ie: 49.7% 99.2% unreserved(mem) 19.7T unused(mem) 28.4T ie: 63.3% 91.5% unreserved(mem) 9.1G unused(mem) 13.2G per unused(slots)
1112 avail(slots), free(load)=2235.6, unresd(mem)=9027.6G, for hgrp=@himem-hosts and minMem=1.0G/slot total(nCPU) 2248 total(mem) 17.1T unused(slots) 1125 unused(load) 2235.6 ie: 50.0% 99.4% unreserved(mem) 8.8T unused(mem) 15.2T ie: 51.6% 89.1% unreserved(mem) 8.0G unused(mem) 13.9G per unused(slots)
362 avail(slots), free(load)=503.4, unresd(mem)=5675.1G, for hgrp=@xlmem-hosts and minMem=1.0G/slot total(nCPU) 504 total(mem) 6.9T unused(slots) 362 unused(load) 503.4 ie: 71.8% 99.9% unreserved(mem) 5.5T unused(mem) 6.7T ie: 80.4% 96.7% unreserved(mem) 15.7G unused(mem) 18.9G per unused(slots)
GPU Usage
Mon May 23 10:37:11 EDT 2022 hostgroup: @gpu-hosts (2 hosts) - --- memory (GB) ---- - #GPU - --------- slots/CPUs --------- hostname - total used resd - a/u - nCPU used load - free unused compute-79-01 - 125.4 6.8 118.6 - 2/0 - 20 0 0.1 - 20 19.9 compute-79-02 - 125.5 7.2 118.3 - 2/0 - 20 0 0.1 - 20 19.9 Total #GPU=4 used=0 (0.0%)
Waiting Job(s)
As of Mon May 23 10:37:05 EDT 2022 1 job waiting for gonzalezv: jobID jobName user age nPEs memReqd queue taskID --------- --------------- ---------------- ------ ---- -------- ------ ------- 4664939 guppy5_ARRAY gonzalezv +2:22 10 60.0 lThC.q 448-663:1 quota rule resource=value/limit %used ------------------- ------------------------------- ------ hiCPU_u_slots/3 slots=380/383 99.2% for gonzalezv in queue lThC.q u_slots/1 slots=380/840 45.2% for gonzalezv u_mem_res/1 mem_res=2.227T/7.835T 28.4% for gonzalezv in queue lThC.q ------------------- ------------------------------- ------ 1 job waiting for kweskinm: jobID jobName user age nPEs memReqd queue taskID --------- --------------- ---------------- ------ ---- -------- ------ ------- 4665215 gwidecodeml kweskinm +1:04 1 2.0 lThC.q 334-582:1 quota rule resource=value/limit %used ------------------- ------------------------------- ------ hiCPU_u_slots/3 slots=383/383 100.0% for kweskinm in queue lThC.q u_slots/1 slots=635/840 75.6% for kweskinm u_mem_res/1 mem_res=766.0G/7.835T 9.5% for kweskinm in queue lThC.q ------------------- ------------------------------- ------ 4 jobs waiting for zhangy: jobID jobName user age nPEs memReqd queue taskID --------- --------------- ---------------- ------ ---- -------- ------ ------- 4665208 spades_mugua_q zhangy +1:09 8 400.0 uThM.q 4665209 spades_Panag zhangy +1:09 8 400.0 uThM.q 4665210 spades_Pneglec_ zhangy +1:09 8 400.0 uThM.q 4665211 spades_Pneglec_ zhangy +1:09 8 400.0 uThM.q quota rule resource=value/limit %used ------------------- ------------------------------- ------ hiMem_u_slots/4 slots=32/35 91.4% for zhangy in queue uThM.q u_mem_res/2 mem_res=1.562T/4.520T 34.6% for zhangy in queue uThM.q u_slots/1 slots=32/840 3.8% for zhangy ------------------- ------------------------------- ------
Overall Quota Usage
quota rule resource=value/limit %used ------------------- ------------------------------- ------ slots/1 slots=2401/5408 44.4% for * blast2GO/1 slots=44/110 40.0% for * mem_res/3 mem_res=1.348T/7.873T 17.1% for * in queue uTxlM.rq mem_res/2 mem_res=2.080T/18.08T 11.5% for * in queue mThM.q mem_res/1 mem_res=3.423T/31.34T 10.9% for * in queue lThC.q mem_res/2 mem_res=1.820T/18.08T 10.1% for * in queue uThM.q mem_res/2 mem_res=1.738T/18.08T 9.6% for * in queue lThM.q mem_res/1 mem_res=2.544T/31.34T 8.1% for * in queue mThC.q mem_res/1 mem_res=198.0G/31.34T 0.6% for * in queue sThC.q mem_res/1 mem_res=101.0G/31.34T 0.3% for * in queue uThC.q
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Memory Usage
Reserved Memory, All High-Memory Queues
Select length:
Current Memory Quota Usage
As of Mon May 23 10:37:06 EDT 2022 quota rule resource=value/limit %used filter ---------------------------------------------------------------------------------------------- mem_res/1 mem_res=3.423T/31.34T 10.9% for * in queue lThC.q mem_res/1 mem_res=101.0G/31.34T 0.3% for * in queue uThC.q mem_res/1 mem_res=198.0G/31.34T 0.6% for * in queue sThC.q mem_res/1 mem_res=2.544T/31.34T 8.1% for * in queue mThC.q mem_res/2 mem_res=1.820T/18.08T 10.1% for * in queue uThM.q mem_res/2 mem_res=1.738T/18.08T 9.6% for * in queue lThM.q mem_res/2 mem_res=2.080T/18.08T 11.5% for * in queue mThM.q mem_res/3 mem_res=1.348T/7.873T 17.1% for * in queue uTxlM.rq
Current Memory Usage by Compute Node, High Memory Nodes Only
hostgroup: @himem-hosts (30 hosts) - ----------- memory (GB) ------------ - --------- slots/CPUs --------- hostname - avail used resd - unused unresd - nCPU used load - free unused compute-64-17 - 503.4 20.8 472.0 - 482.6 31.4 - 32 11 3.7 - 21 28.3 compute-64-18 - 503.4 25.7 496.0 - 477.7 7.4 - 32 12 4.8 - 20 27.2 compute-65-02 - 503.6 20.5 120.0 - 483.1 383.6 - 64 60 60.0 - 4 4.0 compute-65-03 - 503.6 29.0 323.0 - 474.6 180.6 - 64 34 26.6 - 30 37.4 compute-65-04 - 503.6 146.7 242.0 - 356.9 261.6 - 64 25 25.0 - 39 39.0 compute-65-05 - 503.6 103.9 165.0 - 399.7 338.6 - 64 19 19.1 - 45 44.9 compute-65-06 - 503.6 145.9 240.0 - 357.7 263.6 - 64 24 24.0 - 40 40.0 compute-65-07 - 503.6 19.8 120.0 - 483.8 383.6 - 64 63 62.5 - 1 1.5 compute-65-08 - 503.6 105.9 221.0 - 397.7 282.6 - 64 27 27.4 - 37 36.6 compute-65-09 - 503.6 39.1 300.0 - 464.5 203.6 - 64 30 26.1 - 34 38.0 compute-75-03 - 755.6 153.1 303.0 - 602.5 452.6 - 128 36 37.7 - 92 90.3 compute-75-04 - 755.6 129.6 381.0 - 626.0 374.6 - 128 43 44.7 - 85 83.3 compute-75-05 - 755.6 27.3 120.0 - 728.3 635.6 - 128 61 61.0 - 67 67.0 compute-75-06 - 755.6 99.6 461.0 - 656.0 294.6 - 128 43 43.0 - 85 85.0 compute-75-07 - 755.6 70.7 292.0 - 684.9 463.6 - 128 58 56.9 - 70 71.1 compute-81-20 - 503.9 69.0 320.0 - 434.9 183.9 - 64 50 22.5 - 14 41.5 compute-81-21 - 503.9 48.1 206.0 - 455.8 297.9 - 64 32 17.8 - 32 46.2 compute-81-23 - 503.9 29.3 428.0 - 474.6 75.9 - 64 25 16.7 - 39 47.3 compute-81-24 - 503.9 32.6 329.0 - 471.3 174.9 - 64 52 19.4 - 12 44.6 compute-81-25 - 503.9 57.0 203.0 - 446.9 300.9 - 64 29 25.8 - 35 38.2 compute-81-26 - 503.9 43.9 272.0 - 460.0 231.9 - 64 47 42.3 - 17 21.7 compute-81-27 - 503.9 75.7 292.0 - 428.2 211.9 - 64 40 22.5 - 24 41.5 compute-81-28 - 503.9 73.9 344.0 - 430.0 159.9 - 64 60 18.6 - 4 45.4 compute-81-29 - 503.9 20.5 422.0 - 483.4 81.9 - 64 21 14.5 - 43 49.5 compute-81-30 - 503.9 36.3 303.0 - 467.6 200.9 - 64 33 30.5 - 31 33.5 compute-84-01 - 881.1 49.6 456.0 - 831.5 425.1 - 112 44 43.2 - 68 68.8 compute-93-01 - 503.8 72.6 164.0 - 431.2 339.8 - 64 18 18.3 - 46 45.7 compute-93-02 - 755.7 25.5 120.0 - 730.2 635.7 - 72 68 68.0 - 4 4.0 compute-93-03 - 755.7 116.6 236.0 - 639.1 519.7 - 72 35 28.4 - 37 43.6 compute-93-04 - 755.7 27.3 126.0 - 728.4 629.7 - 72 23 25.8 - 49 46.2 ======= ===== ====== ==== ==== ===== Totals 17504.6 1915.5 8477.0 2248 1123 936.7 ==> 10.9% 48.4% ==> 50.0% 41.7% Most unreserved/unused memory (635.7/730.2GB) is on compute-93-02 with 4/4.0 slots/CPUs free/unused. hostgroup: @xlmem-hosts (7 hosts) - ----------- memory (GB) ------------ - --------- slots/CPUs --------- hostname - avail used resd - unused unresd - nCPU used load - free unused compute-00-01 - 1007.8 x x - node down - 72 x x - x x compute-00-02 - 1007.8 17.2 0.0 - 990.6 1007.8 - 72 0 0.8 - 72 71.2 compute-75-01 - 1007.6 90.2 600.0 - 917.4 407.6 - 128 72 64.8 - 56 63.2 compute-75-02 - 1007.6 49.5 780.0 - 958.1 227.6 - 128 70 13.3 - 58 114.7 compute-82-03 - 1007.9 17.4 0.0 - 990.5 1007.9 - 40 0 0.0 - 40 40.0 compute-82-04 - 1007.9 21.1 0.0 - 986.8 1007.9 - 40 0 0.1 - 40 39.9 compute-93-05 - 2016.3 34.8 0.0 - 1981.5 2016.3 - 96 0 0.0 - 96 96.0 ======= ===== ====== ==== ==== ===== Totals 7055.1 230.2 1380.0 504 142 79.0 ==> 3.3% 19.6% ==> 28.2% 15.7% Most unreserved/unused memory (2016.3/1981.5GB) is on compute-93-05 with 96/96.0 slots/CPUs free/unused.
Past Memory Usage vs Memory Reservation
Past memory use in hi-mem queues between 05/11/22 and 05/18/22 queues: ?ThM.q ----------- total --------- -------------------- mean -------------------- user no. of elapsed time eff. reserved maxvmem average ratio name jobs/slots [d] [%] [GB] [GB] [GB] resd/maxvmem --------------- -------------- ------------ ----- --------- -------- --------- ------------ koenemannd 2/2 0.00 castanedaricos 1/2 0.00 29.7 0.0 12.0 0.0 0.0 mulderk 1/1 0.00 2.4 50.0 0.3 0.0 143.1 > 2.5 dikowr 19/542 0.00 17.6 92.3 148.2 0.1 0.6 caballeroeg 60/1800 0.00 0.7 145.9 94.3 0.0 1.5 linat 4/4 0.01 103.2 40.0 23.5 0.3 1.7 ahsouri 78/1872 0.02 5.3 24.0 9.3 0.2 2.6 > 2.5 stegmannt 3/24 0.02 23.4 128.0 73.6 9.8 1.7 limhc 2/24 0.06 97.6 160.0 29.6 17.9 5.4 > 2.5 macdonaldk 5/48 0.07 84.8 288.0 28.7 15.6 10.0 > 2.5 hkwon 7/112 0.08 40.2 8.0 35.5 1.9 0.2 mcgowenm 6/72 0.10 79.7 149.9 89.4 36.8 1.7 hartvigi 1/24 0.11 30.9 240.0 513.6 0.4 0.5 holmk 2/4 0.72 91.4 400.0 4.4 4.1 91.4 > 2.5 byerlyp 5/10 0.94 50.0 8.0 4.1 4.0 1.9 myerse 3/72 1.12 80.2 24.0 22.6 0.9 1.1 ariasc 7/210 1.60 87.8 240.0 57.1 43.4 4.2 > 2.5 gionfriddoc 2/16 1.78 77.7 128.0 71.9 1.1 1.8 bourkeb 43/46 1.84 99.3 165.5 152.5 72.4 1.1 kimay 1/6 2.02 16.7 150.0 18.5 14.6 8.1 > 2.5 santosbe 8/240 4.16 85.1 300.0 21.7 19.8 13.8 > 2.5 moutonj 4/4 4.69 99.8 32.0 11.4 6.5 2.8 > 2.5 sossajef 38/609 5.95 95.2 228.4 27.9 17.0 8.2 > 2.5 uribeje 12/120 8.14 36.2 217.2 164.3 66.3 1.3 sylvain 142/1115 13.00 71.6 80.0 67.9 8.8 1.2 jwilzews 384/384 38.95 93.6 11.7 6.0 1.8 1.9 cnowlan 58726/58726 285.83 98.6 10.0 5.7 5.5 1.7 --------------- -------------- ------------ ----- --------- -------- --------- ------------ all 59566/66089 371.18 94.8 28.3 13.6 7.4 2.1 --- queues: ?TxlM.rq ----------- total --------- -------------------- mean -------------------- user no. of elapsed time eff. reserved maxvmem average ratio name jobs/slots [d] [%] [GB] [GB] [GB] resd/maxvmem --------------- -------------- ------------ ----- --------- -------- --------- ------------ dikowr 1/24 0.00 ariasc 2/80 0.00 0.6 0.0 400.0 0.0 0.0 kistlerl 1/30 0.00 32.9 300.0 33.2 5.9 9.0 > 2.5 gonzalezv 9/272 0.31 53.5 939.7 78.1 1.1 12.0 > 2.5 graujh 4/108 0.74 35.3 476.3 192.0 92.0 2.5 --------------- -------------- ------------ ----- --------- -------- --------- ------------ all 17/514 1.04 40.6 612.0 158.5 65.3 3.9 > 2.5
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Resource Limits
Limit slots/user in hiCPU queues users {*} queues {sThC.q} to slots=840 users {*} queues {mThC.q} to slots=813 users {*} queues {lThC.q} to slots=383 users {*} queues {uThC.q} to slots=127 Limit slots for all users together users * to slots=5408 users * queues {sThC.q,lThC.q,mThC.q,uThC.q} to slots=4600 users * queues {sThM.q,mThM.q,lThM.q,uThM.q} to slots=2296 users * queues {uTxlM.rq} to slots=576 Limit slots/user for all queues users {*} to slots=840 Limit slots/user for hiMem queues users {*} queues {sThM.q} to slots=718 users {*} queues {mThM.q} to slots=287 users {*} queues {lThM.q} to slots=191 users {*} queues {uThM.q} to slots=35 Limit slots/user for xlMem restricted queue users {*} queues {uTxlM.rq} to slots=576 Limit reserved memory per user for specific queues users {*} queues {sThC.q,lThC.q,mThC.q,uThC.q} to mem_res=8023G users {*} queues {sThM.q,mThM.q,lThM.q,uThM.q} to mem_res=4628G users {*} queues {uTxlM.rq} to mem_res=8062G Limit total reserved memory for all users per queue type users * queues {sThC.q,lThC.q,mThC.q,uThC.q} to mem_res=32095G users * queues {sThM.q,mThM.q,lThM.q,uThM.q} to mem_res=18512G users * queues {uTxlM.rq} to mem_res=8062G Limit slots/user for interactive (qrsh) queues users {*} queues {qrsh.iq} to slots=16 Limit to set aside a slot and some memory for blast2GO users * queues !lTb2g.q hosts {@b2g-hosts} to slots=110 users * queues !lTb2g.q hosts {@b2g-hosts} to mem_res=832G users * queues lTb2g.q hosts {@b2g-hosts} to slots=1 users {*} queues lTb2g.q hosts {@b2g-hosts} to slots=1 Limit GPUs for all users in GPU queues users * queues {lTgpu.q} to num_gpu=4 users * queues {qgpu.iq} to num_gpu=4 Limit GPUs per user in GPU queues users {*} queues {lTgpu.q} to num_gpu=3 users {*} queues {qgpu.iq} to num_gpu=2 Limit total bigtmp concurrent request per user users {*} to big_tmp=25 Limit total number of idl licenses per user users {*} to idlrt_license=102 Limit slots/user for io queue users {*} queues {lTIO.sq} to slots=8 Limit the number of concurrent jobs per user for some queues users {*} queues {uTxlM.rq} to no_concurrent_jobs=3 users {*} queues {lTIO.sq} to no_concurrent_jobs=2 users {*} queues {qrsh.iq} to no_concurrent_jobs=1 users {*} queues {qgpu.iq} to no_concurrent_jobs=1
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Disk Usage & Quota
As of Mon May 23 05:06:02 EDT 2022
Disk Usage
Filesystem Size Used Avail Capacity Mounted on netapp-fas83:/vol_home 36.00T 6.94T 29.06T 20%/30% /home netapp-fas83-n02:/vol_data_bio 4.75T 1.19G 4.75T 1%/1% /data/biology netapp-fas83-n01:/vol_data_data_scien 4.75T 1.16G 4.75T 1%/1% /data/data_science netapp-fas83-n01:/vol_data_fellows 4.75T 1.18G 4.75T 1%/1% /data/fellows netapp-fas83-n02:/vol_data_nasm 4.75T 6.68G 4.74T 1%/1% /data/nasm netapp-fas83-n02:/vol_data_genomics 47.50T 8.23T 39.27T 18%/2% /data/genomics netapp-fas83-n02:/vol_data_sao 47.50T 14.56T 32.94T 31%/53% /data/sao netapp-fas83-n02:/vol_pool_bio 1.90T 81.64G 1.82T 5%/1% /pool/biology netapp-fas83-n02:/vol_pool_data_scien 5.00T 0.47G 5.00T 1%/1% /pool/data_science netapp-fas83-n02:/vol_pool_fellows 5.00T 0.47G 5.00T 1%/1% /pool/fellows netapp-fas83-n02:/vol_pool_nasm 5.00T 0.74G 5.00T 1%/1% /pool/nasm netapp-fas83-n02:/vol_pool_genomics 120.00T 55.14T 64.86T 46%/6% /pool/genomics netapp-fas83-n02:/vol_pool_sao 114.00T 10.53T 103.47T 10%/1% /pool/sao netapp-fas80-n02:/vol_spare 30.00T 3.93T 26.07T 14%/1% /pool/spare gpfs01:biology 5.00T 0.00G 5.00T 0%/1% /scratch/biology gpfs01:data_science 5.00T 0.00G 5.00T 0%/1% /scratch/data_science gpfs01:fellows 30.00T 103.97G 29.90T 1%/1% /scratch/fellows gpfs01:genomics 300.00T 177.84T 122.16T 60%/10% /scratch/genomics gpfs01:sao 140.00T 38.86T 101.14T 28%/1% /scratch/sao netapp-fas83-n02:/vol_pool_kozakk 11.00T 9.72T 1.28T 89%/1% /pool/kozakk netapp-fas83-n01:/vol_pool_nmnh_ggi 21.00T 13.80T 7.20T 66%/2% /pool/nmnh_ggi netapp-fas83-n01:/vol_pool_sao_access 19.95T 5.38T 14.57T 27%/2% /pool/sao_access netapp-fas83-n01:/vol_pool_sao_rtdc 10.45T 285.27G 10.17T 3%/1% /pool/sao_rtdc netapp-fas83-n01:/vol_pool_sylvain 30.00T 21.86T 8.14T 73%/17% /pool/sylvain gpfs01:nmnh_bradys 25.00T 19.57T 5.43T 79%/49% /scratch/bradys gpfs01:nmnh_kistlerl 100.00T 88.90T 11.10T 89%/8% /scratch/kistlerl gpfs01:nmnh_meyerc 25.00T 50.43G 24.95T 1%/1% /scratch/meyerc gpfs01:nmnh_quattrinia 20.00T 15.24T 4.76T 77%/24% /scratch/nmnh_corals gpfs01:nmnh_ggi 77.00T 16.09T 60.91T 21%/2% /scratch/nmnh_ggi gpfs01:nmnh_lab 25.00T 3.33T 21.67T 14%/1% /scratch/nmnh_lab gpfs01:nmnh_mammals 25.00T 3.44T 21.56T 14%/7% /scratch/nmnh_mammals gpfs01:nzp_ccg 35.00T 15.12T 19.88T 44%/2% /scratch/nzp_ccg gpfs01:sao_atmos 250.00T 221.65T 28.35T 89%/3% /scratch/sao_atmos gpfs01:sao_cga 25.00T 8.73T 16.27T 35%/5% /scratch/sao_cga gpfs01:sao_tess 50.00T 24.79T 25.21T 50%/83% /scratch/sao_tess gpfs01:nmnh_schultzt 25.00T 13.58T 11.42T 55%/20% /scratch/schultzt gpfs01:stri_ap 25.00T 18.65T 6.35T 75%/1% /scratch/stri_ap gpfs01:sao_sylvain 70.00T 47.59T 22.41T 68%/34% /scratch/sylvain gpfs01:usda_sel 25.00T 3.44T 21.56T 14%/12% /scratch/usda_sel gpfs01:wrbu 40.00T 17.12T 22.88T 43%/5% /scratch/wrbu netapp-fas83-n01:/vol_data_admin 1.90T 13.72G 1.89T 1%/1% /data/admin netapp-fas83-n01:/vol_pool_admin 14.25T 10.41T 3.84T 74%/2% /pool/admin gpfs01:admin 20.00T 2.93T 17.07T 15%/28% /scratch/admin gpfs01:bioinformatics_dbs 10.00T 2.06T 7.94T 21%/1% /scratch/dbs gpfs01:tmp 100.00T 1.96G 100.00T 1%/1% /scratch/tmp gpfs01:ocio_ids 5.00T 0.00G 5.00T 0%/1% /scratch/ocio_ids emc-isilon:/ifs/nfs/hydra 60.00T 38.12T 21.88T 64%/1% /pool/isilon nas:/mnt/pool_01/admin 20.00T 2.81T 17.19T 15%/1% /store/admin nas:/mnt/pool_03/public 175.00T 60.52T 114.48T 35%/1% /store/public nas:/mnt/pool_02/nmnh_bradys 40.00T 3.57T 36.43T 9%/1% /store/bradys nas:/mnt/pool_03/nmnh_ggi 90.00T 37.17T 52.83T 42%/1% /store/nmnh_ggi nas:/mnt/pool_01/sao_atmos 299.90T 223.40T 76.50T 75%/1% /store/sao_atmos nas:/mnt/pool_01/sao_sylvain 100.00T 8.39T 91.61T 9%/1% /store/sylvain nas:/mnt/pool_02/nmnh_schultzt 40.00T 15.03T 24.97T 38%/1% /store/schultzt nas:/mnt/pool_02/wrbu 40.00T 3.31T 36.69T 9%/1% /store/wrbu
You can view plots of disk use vs time, for the past 7, 30, or 120 days; as well as plots of disk usage by user, or by device (for the past 90 or 240 days respectively).Notes
Capacity shows % disk space full and % of inodes used.
When too many small files are written on a disk, the file system can become full because it is unable to keep track of new files.
The % of inodes should be lower or comparable to the % of disk space used.
If it is much larger, the disk can become unusable before it gets full.
You can view the plots of the GPFS IB traffic for the past 1 , 7 or 30 days.
Disk Quota Report
Disk quota report: show usage above 85% of quota, (warning when quota > 95%), as of Mon May 23 03:00:10 2022. Volume=GPFS:scratch_genomics, mounted as /scratch/genomics -- disk -- -- #files -- default quota: 10.00TB/26.2M Disk usage %quota usage %quota name, affiliation - username (indiv. quota) -------------------- ------- ------ ------ ------ ------------------------------------------- /scratch/genomics 8.97TB 89.7% 0.00M 0.0% Michael Campana, NMNH/NZP/CCEG - campanam /scratch/genomics 8.95TB 89.5% 5.05M 19.3% Mohammad Vatanparast, NHB - vatanparastm /scratch/genomics 8.67TB 86.7% 1.57M 6.0% Jose Grau, SCBI - graujh Volume=GPFS:scratch_sao, mounted as /scratch/sao -- disk -- -- #files -- default quota: 10.00TB/26.2M Disk usage %quota usage %quota name, affiliation - username (indiv. quota) -------------------- ------- ------ ------ ------ ------------------------------------------- /scratch/sao 9.08TB 90.8% 0.03M 0.1% Robert Hargreaves, SAO/AMP - rhargrea Volume=GPFS:scratch_stri_ap, mounted as /scratch/stri_ap -- disk -- -- #files -- default quota: 5.00TB/12.6M Disk usage %quota usage %quota name, affiliation - username (indiv. quota) -------------------- ------- ------ ------ ------ ------------------------------------------- /scratch/stri_ap 13.90TB 92.7% 0.53M 4.2% Carlos Arias, STRI - ariasc (15.0TB/12M) Volume=NAS:store_public, mounted as /store/public -- disk -- -- #files -- default quota: 0.0MB/0.0M Disk usage %quota usage %quota name, affiliation - username (indiv. quota) -------------------- ------- ------ ------ ------ ------------------------------------------- /store/public 4.46TB 89.3% - - Mirian Tsuchiya, NMNH/Botany - tsuchiyam (5.0TB/0M)
SSD Usage
Node -------------------------- /ssd ------------------------------- Name Size Used Avail Use% | Resd Avail Resd% | Resd/Used 64-17 3.49T 0.0G 3.49T 0.0% | 0.0G 3.49T 0.0% | 0.00 64-18 3.49T 0.0G 3.49T 0.0% | 0.0G 3.49T 0.0% | 0.00 65-02 3.49T 0.0G 3.49T 0.0% | 0.0G 3.49T 0.0% | 0.00 65-03 3.49T 0.0G 3.49T 0.0% | 0.0G 3.49T 0.0% | 0.00 65-04 3.49T 6.1G 3.48T 0.2% | 0.0G 3.49T 0.0% | 0.00 65-05 3.49T 6.1G 3.48T 0.2% | 0.0G 3.49T 0.0% | 0.00 65-06 3.49T 6.1G 3.48T 0.2% | 0.0G 3.49T 0.0% | 0.00 65-07 3.49T 56.3G 3.44T 1.6% | 0.0G 3.49T 0.0% | 0.00 65-08 3.49T 12.3G 3.48T 0.3% | 0.0G 3.49T 0.0% | 0.00 65-09 3.49T 0.0G 3.49T 0.0% | 0.0G 3.49T 0.0% | 0.00 75-01 6.98T 0.0G 6.98T 0.0% | 0.0G 6.98T 0.0% | 0.00 75-02 6.98T 0.0G 6.98T 0.0% | 0.0G 6.98T 0.0% | 0.00 75-03 6.98T 0.0G 6.98T 0.0% | 0.0G 6.98T 0.0% | 0.00 75-04 6.98T 0.0G 6.98T 0.0% | 0.0G 6.98T 0.0% | 0.00 75-05 6.98T 0.0G 6.98T 0.0% | 0.0G 6.98T 0.0% | 0.00 75-06 6.98T 50.2G 6.93T 0.7% | 0.0G 6.98T 0.0% | 0.00 75-07 6.98T 50.2G 6.93T 0.7% | 0.0G 6.98T 0.0% | 0.00 79-01 7.28T 0.0G 7.28T 0.0% | 0.0G 7.28T 0.0% | 0.00 79-02 7.28T 0.0G 7.28T 0.0% | 0.0G 7.28T 0.0% | 0.00 82-03 3.49T 0.0G 3.49T 0.0% | 54.3G 3.44T 1.5% | 0.00 84-01 5.24T 17.4G 5.22T 0.3% | 0.0G 5.24T 0.0% | 0.00 93-05 6.98T 0.0G 6.98T 0.0% | 0.0G 6.98T 0.0% | 0.00 --------------------------------------------------------------- Total 114.0T 204.8G 113.8T 0.2% | 54.3G 114.0T 0.0% | 0.26
Note: the disk usage and the quota report are compiled 4x/day, the SSD usage is updated every 10m.