Details on Jobs in the High-Memory Queues that Produced a Warning

Details on Jobs that Produced a Warning

jobID.tID jobName user queue - mem_res max(vmem) - vmem avgmem cpu age eff. nslots ------------------------------------------------------------------------------------------------------------------------ 14418471.328 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.971G 2.812G 14.2h 14.3h 99.7% 1 14418471.332 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.971G - 2.970G 2.803G 12.4h 12.4h 99.6% 1 14418471.334 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.971G 2.787G 12.1h 12.1h 99.7% 1 14418471.336 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.971G - 2.971G 2.816G 11.6h 11.7h 99.6% 1 14418471.337 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.967G - 2.966G 2.743G 11.6h 11.6h 99.5% 1 14418471.338 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.967G - 2.966G 2.814G 11.1h 11.2h 99.6% 1 14418471.340 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.973G - 2.972G 2.803G 10.0h 10.1h 99.7% 1 14418471.342 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.974G - 2.972G 2.739G 8.8h 8.9h 99.6% 1 14418471.343 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.973G - 2.972G 2.789G 8.6h 8.6h 99.8% 1 14418471.344 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.973G - 2.972G 2.753G 8.5h 8.6h 99.5% 1 14418471.345 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.971G 2.835G 8.3h 8.3h 99.6% 1 14418471.346 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.971G 2.826G 8.2h 8.2h 99.6% 1 14418471.347 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.976G - 2.975G 2.749G 7.6h 7.7h 99.7% 1 14418471.348 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.971G 2.754G 7.4h 7.4h 99.5% 1 14418471.349 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.971G 2.720G 7.1h 7.1h 99.7% 1 14418471.350 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.970G - 2.969G 2.722G 7.1h 7.1h 99.4% 1 14418471.351 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.969G - 2.968G 2.647G 6.9h 6.9h 99.7% 1 14418471.352 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.974G - 2.973G 2.724G 6.6h 6.6h 99.7% 1 14418471.353 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.975G - 2.974G 2.763G 6.5h 6.6h 99.6% 1 14423581.1 assT023 peresph mThM.q - 120.0G >> 71.472G - 67.925G 55.651G 9.8h 1.8h 93.4% 6/mthread 14421513.1 ass04 peresph mThM.q - 60.0G > 48.356G - 0.463G 14.461G 2.3d 1.9d 20.2% 6/mthread 14423495.1 C3b_hmsc niez mThM.q - 96.0G >> 8.623G - 8.408G 1.442G 4.9d 7.8h 374.8% 4/mthread 14421521.1 ass12 peresph mThM.q - 60.0G >> 33.515G - 0.658G 13.352G 2.4d 1.9d 20.9% 6/mthread 14423579.1 assId009 peresph mThM.q - 120.0G >> 72.634G - 67.852G 54.258G 9.7h 1.8h 92.4% 6/mthread 14421523.1 ass14 peresph mThM.q - 60.0G > 48.421G - 0.752G 16.252G 2.7d 1.9d 23.7% 6/mthread 14423583.1 assT420 peresph mThM.q - 120.0G >> 71.500G - 10.868G 47.084G 9.6h 1.8h 91.9% 6/mthread 14421504.1 ass01 peresph mThM.q - 60.0G >> 36.499G - 0.463G 13.580G 1.8d 1.9d 16.1% 6/mthread 14421512.1 ass03 peresph mThM.q - 60.0G >> 25.487G - 0.338G 9.407G 2.1d 1.9d 18.6% 6/mthread 14421525.1 ass16 peresph mThM.q - 60.0G >> 40.914G - 0.580G 15.082G 1.9d 1.9d 16.6% 6/mthread 14423580.1 assId051 peresph mThM.q - 120.0G >> 32.604G - 30.201G 28.661G 9.5h 1.8h 90.8% 6/mthread 14419930.1 Step3_ribodetec bourkeb mThM.q - 256.0G >> 183.365G - 182.583G 17.599G 19.6d 3.0d 82.9% 8/mthread 14421515.1 ass06 peresph mThM.q - 60.0G > 50.667G - 0.747G 15.484G 1.9d 1.9d 16.4% 6/mthread 14422244.1 ass11rep peresph mThM.q - 120.0G > 113.745G - 0.732G 31.264G 2.0d 1.0d 32.8% 6/mthread 14423658.1 hifiasm_Kandula pradon mThM.q - 12.0G << 111.463G - 111.463G 78.298G 15.8h 0.7h 36.1% 64/mthread 14421517.1 ass08 peresph mThM.q - 60.0G >> 34.470G - 23.965G 13.256G 2.1d 1.9d 18.8% 6/mthread 14418418.1 bpp_A11_williso figueiroh mThM.q - 128.0G >> 0.273G - 0.273G 0.255G 6.1d 6.1d 12.5% 8/mthread 14421516.1 ass07 peresph mThM.q - 60.0G >> 43.039G - 0.463G 12.770G 35.0h 1.9d 13.0% 6/mthread 14421511.1 ass02 peresph mThM.q - 60.0G > 53.762G - 0.346G 11.362G 2.4d 1.9d 21.6% 6/mthread 14422996.1 loco-pipe-N187- longk mThM.q - 640.0G >> 112.364G - 43.257G 13.172G 9.8d 20.4h 36.2% 32/mthread 14421518.1 ass09 peresph mThM.q - 60.0G >> 39.513G - 0.752G 12.193G 3.6d 1.9d 32.1% 6/mthread 14405067.1 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 25.539G - 25.539G 25.067G 12.0d 12.0d 99.8% 1 14405069.3 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 27.673G - 27.673G 27.116G 12.0d 12.0d 99.8% 1 14405075.9 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 19.172G - 19.172G 18.669G 12.0d 12.0d 99.8% 1 14422897.1 earlgrey zhangy lThM.q - 192.0G >> 49.979G - 0.680G 2.042G 4.1d 20.7h 39.9% 12/mthread 14422897.2 earlgrey zhangy lThM.q - 192.0G >> 16.424G - 1.301G 1.165G 9.2d 20.7h 89.1% 12/mthread 14422897.3 earlgrey zhangy lThM.q - 192.0G >> 52.227G - 4.727G 1.980G 4.1d 20.7h 39.9% 12/mthread 14422897.5 earlgrey zhangy lThM.q - 192.0G >> 7.817G - 2.282G 1.131G 8.0d 20.7h 77.1% 12/mthread 14422897.6 earlgrey zhangy lThM.q - 192.0G > 161.229G - 90.764G 5.866G 2.9d 20.7h 28.3% 12/mthread 14422897.7 earlgrey zhangy lThM.q - 192.0G >> 6.294G - 1.810G 1.231G 9.3d 20.7h 90.5% 12/mthread 14422897.8 earlgrey zhangy lThM.q - 192.0G >> 90.315G - 2.477G 2.959G 3.8d 20.7h 36.9% 12/mthread 14422897.9 earlgrey zhangy lThM.q - 192.0G >> 96.665G - 5.665G 2.124G 3.8d 20.7h 36.8% 12/mthread 14422897.10 earlgrey zhangy lThM.q - 192.0G >> 49.812G - 0.465G 1.341G 7.4d 20.7h 71.7% 12/mthread 14422897.11 earlgrey zhangy lThM.q - 192.0G >> 119.540G - 2.915G 1.346G 6.9d 20.7h 66.5% 12/mthread 14422897.12 earlgrey zhangy lThM.q - 192.0G >> 49.818G - 21.948G 1.597G 5.8d 20.7h 55.7% 12/mthread 14405252.55 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 61.271G - 61.271G 60.403G 11.7d 11.7d 99.7% 1 14423590.1 sapdescript santosbe lThM.q - 320.0G >> 14.772G - 0.648G 7.976G 9.2h 1.7h 67.3% 8/mthread 14405246.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.467G - 49.375G 48.701G 11.7d 11.8d 99.7% 1 14405257.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.464G - 49.464G 48.788G 11.7d 11.7d 99.7% 1 14423540.1 masurca santosbe lThM.q - 330.0G >> 89.977G - 52.362G 8.189G 6.6d 4.6h 116.4% 30/mthread 14405253.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.742G - 52.742G 52.033G 11.7d 11.7d 99.7% 1 14423598.1 sapdescript santosbe lThM.q - 320.0G >> 18.832G - 0.648G 8.281G 8.0h 1.7h 59.4% 8/mthread 14423591.1 sapdescript santosbe lThM.q - 320.0G >> 14.461G - 0.648G 7.270G 7.8h 1.7h 57.2% 8/mthread 14423599.1 sapdescript santosbe lThM.q - 320.0G >> 48.183G - 47.933G 18.145G 11.5h 1.7h 85.6% 8/mthread 14405234.107 CJS_nbraw_nc suttonm lThM.q - 64.0G >> 49.529G - 49.438G 48.731G 11.8d 11.8d 99.7% 1 14405240.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.949G - 64.949G 64.056G 11.7d 11.8d 99.7% 1 14405242.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.741G - 52.741G 52.038G 11.7d 11.8d 99.7% 1 14423601.1 sapdescript santosbe lThM.q - 320.0G >> 21.712G - 19.867G 12.053G 11.5h 1.7h 85.4% 8/mthread 14423603.1 sapdescript santosbe lThM.q - 320.0G >> 34.386G - 34.386G 13.780G 11.2h 1.7h 83.2% 8/mthread 14423539.1 masurca santosbe lThM.q - 330.0G >> 89.977G - 42.848G 5.352G 7.6d 4.6h 132.0% 30/mthread 14405142.85 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 26.225G - 26.225G 25.747G 12.0d 12.0d 99.7% 1 14405159.104 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 34.124G - 34.124G 26.798G 12.0d 12.0d 99.7% 1 14423604.1 sapdescript santosbe lThM.q - 320.0G >> 45.398G - 0.898G 17.381G 10.2h 1.7h 75.8% 8/mthread 14423545.1 masurca santosbe lThM.q - 330.0G >> 89.977G - 6.258G 14.545G 3.8d 3.7h 82.1% 30/mthread 14423605.1 sapdescript santosbe lThM.q - 320.0G >> 95.831G - 95.831G 39.210G 10.3h 1.7h 76.3% 8/mthread 14405165.110 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 37.120G - 37.120G 36.540G 12.0d 12.0d 99.7% 1 14423592.1 sapdescript santosbe lThM.q - 320.0G >> 22.140G - 0.648G 11.111G 10.1h 1.7h 74.3% 8/mthread 14405250.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.886G - 64.886G 64.086G 11.7d 11.7d 99.7% 1 14405247.108 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 57.371G - 57.371G 56.654G 11.7d 11.8d 99.7% 1 14405256.100 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 53.216G - 53.216G 52.479G 11.7d 11.7d 99.7% 1 14423586.1 sapdescript santosbe lThM.q - 320.0G >> 32.265G - 3.052G 13.648G 10.9h 1.7h 80.1% 8/mthread 14423594.1 sapdescript santosbe lThM.q - 320.0G >> 42.065G - 34.065G 17.412G 9.8h 1.7h 72.9% 8/mthread 14423595.1 sapdescript santosbe lThM.q - 320.0G >> 43.382G - 41.378G 18.525G 9.7h 1.7h 72.1% 8/mthread 14423602.1 sapdescript santosbe lThM.q - 320.0G >> 32.792G - 31.042G 16.186G 10.9h 1.7h 80.8% 8/mthread 14423584.1 sapdescript santosbe lThM.q - 320.0G >> 64.960G - 62.956G 28.848G 10.8h 1.7h 79.7% 8/mthread 14423600.1 sapdescript santosbe lThM.q - 320.0G >> 52.019G - 52.019G 17.259G 11.6h 1.7h 86.0% 8/mthread 14423538.1 masurca santosbe lThM.q - 330.0G >> 89.977G - 43.956G 8.763G 7.0d 4.7h 119.4% 30/mthread 14423524.1 sapdescript santosbe lThM.q - 320.0G >> 63.175G - 3.520G 35.933G 30.8h 5.6h 69.2% 8/mthread 14405284.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.866G - 52.866G 52.004G 11.5d 11.5d 99.7% 1 14405288.100 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 53.216G - 53.216G 52.435G 11.5d 11.5d 99.8% 1 14405289.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.531G - 49.437G 48.657G 11.5d 11.5d 99.8% 1 14423593.1 sapdescript santosbe lThM.q - 320.0G >> 19.039G - 15.039G 9.610G 11.1h 1.7h 81.4% 8/mthread 14423589.1 sapdescript santosbe lThM.q - 320.0G >> 23.015G - 17.765G 10.880G 10.7h 1.7h 78.9% 8/mthread 14405281.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.949G - 64.949G 63.881G 11.5d 11.5d 99.8% 1 14405290.108 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 57.433G - 57.433G 56.491G 11.5d 11.5d 99.8% 1 14423588.1 sapdescript santosbe lThM.q - 320.0G >> 18.992G - 17.132G 9.924G 11.9h 1.7h 87.6% 8/mthread 14405283.55 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 61.930G - 61.852G 60.858G 11.5d 11.5d 99.8% 1

A warning is generated if either: • too much or too little memory is reserved: mem_res versus max(vmem); or • the job efficiency is too low or is too high. Click on the link under the jobID.tID heading to view the job's corresponding graph.

The quantity mem_res is the amount of memory reserved for the job, while max(vmem) is the maximum amount of memory a job has used (so far); to optimize the cluster's memory usage, these two numbers should be similar.

The job efficiency, eff., is the amount of CPU used so far divided by the product of the age by the number of slots. • A low efficiency means that the job is not using all the allocated CPUs (slots); • a value above 100% means that the job is using more CPUs cycles (threads) than the requested number of slots (nslots).

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