Details on Jobs in the High-Memory Queues that Produced a Warning

Details on Jobs that Produced a Warning

jobID.tID jobName user queue - mem_res max(vmem) - vmem avgmem cpu age eff. nslots ------------------------------------------------------------------------------------------------------------------------ 14418471.327 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.975G - 2.975G 2.822G 11.5h 11.6h 99.7% 1 14418471.328 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.971G 2.762G 10.6h 10.6h 99.6% 1 14418471.330 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.976G - 2.974G 2.801G 10.0h 10.1h 99.7% 1 14418471.331 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.970G - 2.969G 2.827G 9.0h 9.1h 99.6% 1 14418471.332 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.971G - 2.970G 2.742G 8.7h 8.8h 99.6% 1 14418471.333 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.971G - 2.970G 2.807G 8.7h 8.8h 99.6% 1 14418471.334 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.971G 2.715G 8.4h 8.4h 99.7% 1 14418471.335 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.965G - 2.964G 2.788G 8.4h 8.4h 99.5% 1 14418471.336 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.971G - 2.971G 2.753G 7.9h 8.0h 99.5% 1 14418471.337 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.967G - 2.966G 2.649G 7.9h 8.0h 99.5% 1 14418471.338 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.967G - 2.966G 2.748G 7.4h 7.5h 99.5% 1 14418471.339 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.975G - 2.974G 2.796G 7.4h 7.5h 99.6% 1 14418471.340 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.973G - 2.972G 2.717G 6.4h 6.4h 99.7% 1 14421513.1 ass04 peresph mThM.q - 60.0G > 48.356G - 0.455G 14.476G 2.3d 1.7d 22.0% 6/mthread 14423495.1 C3b_hmsc niez mThM.q - 96.0G >> 8.457G - 8.163G 1.305G 2.5d 4.1h 359.8% 4/mthread 14421521.1 ass12 peresph mThM.q - 60.0G >> 33.515G - 0.580G 13.370G 2.4d 1.7d 22.7% 6/mthread 14421523.1 ass14 peresph mThM.q - 60.0G > 48.421G - 0.752G 16.277G 2.7d 1.7d 25.8% 6/mthread 14421504.1 ass01 peresph mThM.q - 60.0G >> 36.499G - 0.146G 13.908G 1.8d 1.7d 17.1% 6/mthread 14421512.1 ass03 peresph mThM.q - 60.0G >> 25.487G - 0.338G 9.659G 2.0d 1.7d 19.6% 6/mthread 14421525.1 ass16 peresph mThM.q - 60.0G >> 40.914G - 0.580G 16.054G 1.7d 1.7d 16.9% 6/mthread 14419930.1 Step3_ribodetec bourkeb mThM.q - 256.0G >> 183.365G - 180.376G 17.600G 18.5d 2.8d 82.9% 8/mthread 14421515.1 ass06 peresph mThM.q - 60.0G > 50.667G - 0.668G 15.528G 1.8d 1.7d 17.8% 6/mthread 14422244.1 ass11rep peresph mThM.q - 120.0G > 113.745G - 1.152G 33.279G 1.7d 21.2h 31.6% 6/mthread 14421522.1 ass13 peresph mThM.q - 60.0G >> 40.991G - 0.416G 14.691G 2.8d 1.7d 27.5% 6/mthread 14421517.1 ass08 peresph mThM.q - 60.0G >> 23.220G - 1.584G 9.737G 1.6d 1.7d 15.6% 6/mthread 14418418.1 bpp_A11_williso figueiroh mThM.q - 128.0G >> 0.273G - 0.273G 0.255G 5.9d 6.0d 12.5% 8/mthread 14421516.1 ass07 peresph mThM.q - 60.0G >> 43.039G - 0.463G 13.203G 33.7h 1.7d 13.6% 6/mthread 14421511.1 ass02 peresph mThM.q - 60.0G > 53.762G - 0.346G 11.538G 2.4d 1.7d 23.1% 6/mthread 14422996.1 loco-pipe-N187- longk mThM.q - 640.0G >> 112.364G - 39.568G 11.758G 7.6d 16.7h 34.2% 32/mthread 14421518.1 ass09 peresph mThM.q - 60.0G >> 37.700G - 37.700G 12.863G 3.3d 1.7d 32.4% 6/mthread 14405067.1 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 25.539G - 25.539G 25.066G 11.8d 11.8d 99.8% 1 14405069.3 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 27.673G - 27.673G 27.115G 11.8d 11.8d 99.8% 1 14405075.9 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 19.172G - 19.172G 18.668G 11.8d 11.8d 99.8% 1 14422897.1 earlgrey zhangy lThM.q - 192.0G >> 49.931G - 7.977G 1.689G 3.7d 17.0h 43.5% 12/mthread 14422897.2 earlgrey zhangy lThM.q - 192.0G >> 16.424G - 1.657G 1.158G 7.5d 17.0h 88.3% 12/mthread 14422897.3 earlgrey zhangy lThM.q - 192.0G >> 52.227G - 18.565G 1.693G 3.7d 17.0h 43.1% 12/mthread 14422897.4 earlgrey zhangy lThM.q - 192.0G >> 49.859G - 35.753G 1.816G 4.0d 17.0h 46.6% 12/mthread 14422897.5 earlgrey zhangy lThM.q - 192.0G >> 7.817G - 2.284G 1.118G 6.5d 17.0h 76.1% 12/mthread 14422897.6 earlgrey zhangy lThM.q - 192.0G > 161.229G - 13.414G 4.371G 2.5d 17.0h 29.6% 12/mthread 14422897.7 earlgrey zhangy lThM.q - 192.0G >> 6.294G - 1.809G 1.226G 7.6d 17.0h 89.8% 12/mthread 14422897.8 earlgrey zhangy lThM.q - 192.0G >> 49.880G - 7.414G 2.490G 3.4d 17.0h 39.7% 12/mthread 14422897.9 earlgrey zhangy lThM.q - 192.0G >> 96.665G - 4.227G 1.864G 3.4d 17.0h 39.7% 12/mthread 14422897.10 earlgrey zhangy lThM.q - 192.0G >> 4.767G - 0.736G 1.168G 6.9d 17.0h 81.5% 12/mthread 14422897.11 earlgrey zhangy lThM.q - 192.0G >> 8.359G - 1.884G 1.107G 6.2d 17.0h 73.3% 12/mthread 14422897.12 earlgrey zhangy lThM.q - 192.0G >> 49.814G - 2.477G 1.385G 5.3d 17.0h 62.9% 12/mthread 14405252.55 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 61.271G - 61.271G 60.397G 11.6d 11.6d 99.7% 1 14423529.1 sapdescript santosbe lThM.q - 320.0G >> 10.541G - 0.398G 5.632G 10.1h 1.9h 66.6% 8/mthread 14405246.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.467G - 49.375G 48.698G 11.6d 11.6d 99.7% 1 14405257.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.464G - 49.464G 48.784G 11.6d 11.6d 99.7% 1 14423540.1 masurca santosbe lThM.q - 330.0G >> 89.977G - 35.536G 46.875G 21.2h 0.9h 79.8% 30/mthread 14405253.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.742G - 52.742G 52.029G 11.6d 11.6d 99.7% 1 14405234.107 CJS_nbraw_nc suttonm lThM.q - 64.0G >> 49.529G - 49.438G 48.728G 11.6d 11.7d 99.7% 1 14405240.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.949G - 64.949G 64.050G 11.6d 11.6d 99.7% 1 14405242.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.741G - 52.741G 52.034G 11.6d 11.6d 99.7% 1 14423539.1 masurca santosbe lThM.q - 330.0G >> 89.977G - 10.908G 27.596G 25.6h 1.0h 89.8% 30/mthread 14405142.85 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 26.225G - 26.225G 25.746G 11.8d 11.8d 99.7% 1 14405159.104 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 34.124G - 34.124G 26.709G 11.8d 11.8d 99.7% 1 14405165.110 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 37.120G - 37.120G 36.539G 11.8d 11.8d 99.7% 1 14405250.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.886G - 64.886G 64.081G 11.6d 11.6d 99.7% 1 14405247.108 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 57.371G - 57.371G 56.650G 11.6d 11.6d 99.7% 1 14405256.100 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 53.216G - 53.216G 52.475G 11.6d 11.6d 99.7% 1 14423526.1 sapdescript santosbe lThM.q - 320.0G >> 32.336G - 0.398G 17.509G 11.3h 1.9h 74.1% 8/mthread 14423538.1 masurca santosbe lThM.q - 330.0G >> 89.977G - 66.726G 45.256G 25.0h 1.0h 83.4% 30/mthread 14423524.1 sapdescript santosbe lThM.q - 320.0G >> 37.675G - 37.675G 20.180G 13.8h 1.9h 90.6% 8/mthread 14405284.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.866G - 52.866G 52.000G 11.4d 11.4d 99.7% 1 14405288.100 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 53.216G - 53.216G 52.431G 11.4d 11.4d 99.8% 1 14405289.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.531G - 49.437G 48.653G 11.4d 11.4d 99.8% 1 14405281.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.949G - 64.949G 63.873G 11.4d 11.4d 99.8% 1 14405290.108 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 57.433G - 57.433G 56.485G 11.4d 11.4d 99.8% 1 14405283.55 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 61.930G - 61.852G 60.851G 11.4d 11.4d 99.8% 1

A warning is generated if either: • too much or too little memory is reserved: mem_res versus max(vmem); or • the job efficiency is too low or is too high. Click on the link under the jobID.tID heading to view the job's corresponding graph.

The quantity mem_res is the amount of memory reserved for the job, while max(vmem) is the maximum amount of memory a job has used (so far); to optimize the cluster's memory usage, these two numbers should be similar.

The job efficiency, eff., is the amount of CPU used so far divided by the product of the age by the number of slots. • A low efficiency means that the job is not using all the allocated CPUs (slots); • a value above 100% means that the job is using more CPUs cycles (threads) than the requested number of slots (nslots).

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