1 #! /bin/csh -f
2 #for RTDC system
3 #jhz 2018-2-26: intiate a script for developing/testing the prototype
4 # program swarm2uvfits
5 #jhz 2018-4-23: updated for new disk names on RTDC/RG
6 #jhz 2018-4-26: update for testing swarmRead for the LSB data
7 #jhz 2018-5-02: update for USB test
8 #jhz 2018-5-09: develop swarm2ms.py to execute CASA tasks
9 #jhz 2018-5-10: export swarm2ms.py a bin area where swarmRead
10 # is located.
11 #jhz 2018-5-11: add instruction lines
12 #jhz 2018-5-24: updated for test on RTDC/RG system
13 #jhz 2018-5-25: add casa alias to the new distribution 5.1.2
14 #jhz 2018-5-25: updated for test on Hilo system (hilodr2)
15 # no casa found
16 #jhz 2018-5-29: add optinx to input variables
17 # add alias casa /usr/local/casa-release-4.7.0-1-el6/bin/casa (from Holly)
18 # on hilodr1 to test CASA 4.7.0
19 #jhz 2018-5-30: options to separate dual rx for CASA measurementSet
20 # outputs
21 # CASA 4.7.0 seems to not work correctly for SMA data
22 # on hilodr1
23 #jhz 2018-5-31: test swarmio library
24 #jhz 2018-6-13: updated the path for the new package-name
25 #jhz 2018-6-14: add version control information to the package
26 #jhz 2018-7-06: export to /opt/sma on RTDC system
27 #jhz 2018-8-03: set up for Geoff Bower test
28 #jhz 2018-8-07: add check/define LD_LIBRARY_PATH
29 date
30 # --------------------------------------------------------------------
31 #
32 # requirement -
33 #
34 # RH 6.7 to 6.9; or CentOS 6.7 to 6.9
35 # CASA 5.1.1 and higher
36 # --------------------------------------------------------------------
37 #
38 # set up c-shell and environment variables -
39 #
40 # INPUT_FILE_DIR - the path of the SMA archived data produced by online
41 # system with the SWARM correlator
42 # INPUT_FILE_NAME - the file name of the SMA archived data that users want
43 # to interpret to measurementSet of CASA
44 # OUTPUT_FILE_PREFIX - the prefix of output file name, for example, SMA180506
45 # will result in SMA180506.ms for the data in measurementSet
46 # for CASA
47 # PATH - the location of the executable binary code and the Python
48 # script
49 # SEPARATE_DRX - a handle for daul receiver:
50 # "Y" to produce two separate RX files in CASA output
51 # "N" to produce a single dual RX file in CASA output
52 set PATH = /opt/sma/SWARM2CASA
53 set PATHBIN = $PATH/bin
54 if (! $?LD_LIBRARY_PATH) then
55 setenv LD_LIBRARY_PATH $PATH/lib
56 else
57 setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:$PATH/lib
58 endif
59 set INPUT_FILE_DIR = /sma/data/science/mir_data/
60 set INPUT_FILE_NAME = 180506_03:52:53
61 setenv OUTPUT_FILE_PREFIX SMA180506
62 set SEPARATE_DRX = N
63 #----------------------------------------------------------------------
64 echo 'Start swarm2casa.csh script -'
65 echo ''
66 echo "SWARM2CASA pipeline version: " `cat $PATH/VERSION`
67 echo "loaded from PATH=$PATH"
68 echo ''
69 echo "OUTPUT_FILE_PREFIX=" $OUTPUT_FILE_PREFIX
70 #
71 # process start -
72 #
73 #for LSB -
74 $PATHBIN/swarmRead $INPUT_FILE_DIR $INPUT_FILE_NAME $OUTPUT_FILE_PREFIX 0 0
75 #for USB -
76 $PATHBIN/swarmRead $INPUT_FILE_DIR $INPUT_FILE_NAME $OUTPUT_FILE_PREFIX 1 0
77 #
78 # run CASA batch process -
79 #
80 #alias casa "/usr/local/casa-release-5.1.2-4.el6/bin/casa"
81 alias casa "/opt/casa-release-5.3.0-143.el6/bin/casa"
82 if($SEPARATE_DRX == "Y") then
83 casa -c $PATHBIN/swarm2ms_d.py
84 echo ''
85 echo 'Two CASA measurementSet data outputs are produced: '
86 echo $OUTPUT_FILE_PREFIX'_rx1.ms &' $OUTPUT_FILE_PREFIX'_rx2.ms'
87 else
88 casa -c $PATHBIN/swarm2ms_s.py
89 echo ''
90 echo 'A single CASA measurementSet data output is produced: '
91 echo $OUTPUT_FILE_PREFIX'.ms'
92 endif
93 echo 'Done, congratulation! exit from the script!'
94 date
95 exit