from:	Tomasz (Tomek) Kaminski 
to:	Jun-Hui Zhao 
date:	Oct 24, 2018, 2:17 PM
subject:	Re: Testing SMA to CASA conversion script

Tomasz (Tomek) Kaminski
	
Oct 24, 2018, 2:17 PM (12 days ago)
	
to me
Hi Jun-Hui

I wanted to give a try the conversion script but it failed very early on. I did my test on rtdc7 and on a dataset I earlier calibrated and imaged in MIR and CASA (so I could compare). I know this dataset has no internal problems. This were my input lines:
set    INPUT_FILE_DIR = /sma/data/science/mir_data/
set    INPUT_FILE_NAME = 181002_03:55:28
setenv OUTPUT_FILE_PREFIX SMAtest0

but the script failed with the log copied below. Any idea what I did wrong?

Tomek

[tkaminsk@rtdc7 band7subcom2]$ ./swarm2casa.csh
Wed Oct 24 14:09:10 EDT 2018
Start swarm2casa.csh script -

SWARM2CASA pipeline version:  SMA-SWARM2CASA 1.0.3 (Smithsonian Astrophysical Observatory 2018-9-03 for test)
loaded from PATH=/opt/sma/SWARM2CASA

OUTPUT_FILE_PREFIX= SMAtest0
Reading LSB data -
############################################################################
# Welcome to the Smithonian Astrophysical Observatory using swarm2casa -   #
# A Pipeline: Converting SMA SWARM Data to CASA MeasurementSet:            #
# swarm2read .......................... DRX version 1.1.1-beta: 2018-09-10 #
############################################################################

Get pathname, input- and output-filenames, sbidx, optidx ......

Handling LSB data -

Warning: Applying no online flagging and no Tsys ...
wideband patch................swarmDrxP version 1.4.2-beta: 2018-09-03

*********************************
*  Observing Date: 2018 Oct 02  *
*********************************

principal investigator...........SMA

Geocentrical coordinates (meter):
SMA-ANTID x y z = 1     -5.7024    -18.9838     15.6098
SMA-ANTID x y z = 2     -0.5089    -25.1506      1.2805
SMA-ANTID x y z = 3      0.0000      0.0000      0.0000
SMA-ANTID x y z = 4      2.7356    -23.7429     -7.7552
SMA-ANTID x y z = 5      1.9559     -7.4637     -5.5016
SMA-ANTID x y z = 6    -17.9164    -59.5564     30.0692
SMA-ANTID x y z = 7     -4.4426    -10.0932     12.2381
SMA-ANTID x y z = 8      4.4421    -63.8724    -21.8370
handling header variables........
number of integrations...........0935
number of c1 + SWARM Spectra.....5
number of polarizations..........1:  XX--non polarization
number of receivers..............2:  rx1->340, rx2->400
number of sidebands..............2:  lsb & usb
number of baselines..............28
number of antennas...............8
number of channels...............65537
solving for antenna-based Tsys...
Segmentation fault (core dumped)
Reading USB data -
############################################################################
# Welcome to the Smithonian Astrophysical Observatory using swarm2casa -   #
# A Pipeline: Converting SMA SWARM Data to CASA MeasurementSet:            #
# swarm2read .......................... DRX version 1.1.1-beta: 2018-09-10 #
############################################################################

Get pathname, input- and output-filenames, sbidx, optidx ......

Handling USB data -

Warning: Applying no online flagging and no Tsys ...
wideband patch................swarmDrxP version 1.4.2-beta: 2018-09-03

*********************************
*  Observing Date: 2018 Oct 02  *
*********************************

principal investigator...........SMA

Geocentrical coordinates (meter):
SMA-ANTID x y z = 1     -5.7024    -18.9838     15.6098
SMA-ANTID x y z = 2     -0.5089    -25.1506      1.2805
SMA-ANTID x y z = 3      0.0000      0.0000      0.0000
SMA-ANTID x y z = 4      2.7356    -23.7429     -7.7552
SMA-ANTID x y z = 5      1.9559     -7.4637     -5.5016
SMA-ANTID x y z = 6    -17.9164    -59.5564     30.0692
SMA-ANTID x y z = 7     -4.4426    -10.0932     12.2381
SMA-ANTID x y z = 8      4.4421    -63.8724    -21.8370
handling header variables........
number of integrations...........0935
number of c1 + SWARM Spectra.....5
number of polarizations..........1:  XX--non polarization
number of receivers..............2:  rx1->340, rx2->400
number of sidebands..............2:  lsb & usb
number of baselines..............28
number of antennas...............8
number of channels...............65537
solving for antenna-based Tsys...
Segmentation fault (core dumped)

=========================================
The start-up time of CASA may vary
depending on whether the shared libraries
are cached or not.
=========================================

IPython 5.1.0 -- An enhanced Interactive Python.

CASA 5.3.0-143   -- Common Astronomy Software Applications

--> CrashReporter initialized.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Argument fitsfile failed to verify.
2018-10-24 18:09:25    WARN    importuvfits::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:25    WARN    concat::utils::verify    Argument vis failed to verify.
2018-10-24 18:09:25    WARN    concat::utils::verify    Some arguments failed to verify!
hit return-key to listobs&plotms check the dual rx data: SMAtest0.ms
2018-10-24 18:09:31    WARN    listobs::utils::verify    Argument vis failed to verify.
2018-10-24 18:09:31    WARN    listobs::utils::verify    Some arguments failed to verify!
2018-10-24 18:09:31    SEVERE    plotms::::    Input file not found:
2018-10-24 18:09:31    SEVERE    plotms::::+    /data4/tkaminsk/SMAdata/CKVulSurvey/band7subcom2/SMAtest0.ms
hit return-key to quit the script


A single CASA measurementSet data output is produced:
SMAtest0.ms
Done, congratulation! exit from the script!
Wed Oct 24 14:12:51 EDT 2018
Tomasz (Tomek) Kaminski
SubMillimeter Array fellow
             *  *  *
 Harvard-Smithsonian
Center for Astrophysics
60 Garden Street, MS 78
Cambridge, MA  02138