from: Tomasz (Tomek) Kaminski
to: Jun-Hui Zhao
date: Oct 24, 2018, 2:17 PM
subject: Re: Testing SMA to CASA conversion script
Tomasz (Tomek) Kaminski
Oct 24, 2018, 2:17 PM (12 days ago)
to me
Hi Jun-Hui
I wanted to give a try the conversion script but it failed very early on. I did my test on rtdc7 and on a dataset I earlier calibrated and imaged in MIR and CASA (so I could compare). I know this dataset has no internal problems. This were my input lines:
set INPUT_FILE_DIR = /sma/data/science/mir_data/
set INPUT_FILE_NAME = 181002_03:55:28
setenv OUTPUT_FILE_PREFIX SMAtest0
but the script failed with the log copied below. Any idea what I did wrong?
Tomek
[tkaminsk@rtdc7 band7subcom2]$ ./swarm2casa.csh
Wed Oct 24 14:09:10 EDT 2018
Start swarm2casa.csh script -
SWARM2CASA pipeline version: SMA-SWARM2CASA 1.0.3 (Smithsonian Astrophysical Observatory 2018-9-03 for test)
loaded from PATH=/opt/sma/SWARM2CASA
OUTPUT_FILE_PREFIX= SMAtest0
Reading LSB data -
############################################################################
# Welcome to the Smithonian Astrophysical Observatory using swarm2casa - #
# A Pipeline: Converting SMA SWARM Data to CASA MeasurementSet: #
# swarm2read .......................... DRX version 1.1.1-beta: 2018-09-10 #
############################################################################
Get pathname, input- and output-filenames, sbidx, optidx ......
Handling LSB data -
Warning: Applying no online flagging and no Tsys ...
wideband patch................swarmDrxP version 1.4.2-beta: 2018-09-03
*********************************
* Observing Date: 2018 Oct 02 *
*********************************
principal investigator...........SMA
Geocentrical coordinates (meter):
SMA-ANTID x y z = 1 -5.7024 -18.9838 15.6098
SMA-ANTID x y z = 2 -0.5089 -25.1506 1.2805
SMA-ANTID x y z = 3 0.0000 0.0000 0.0000
SMA-ANTID x y z = 4 2.7356 -23.7429 -7.7552
SMA-ANTID x y z = 5 1.9559 -7.4637 -5.5016
SMA-ANTID x y z = 6 -17.9164 -59.5564 30.0692
SMA-ANTID x y z = 7 -4.4426 -10.0932 12.2381
SMA-ANTID x y z = 8 4.4421 -63.8724 -21.8370
handling header variables........
number of integrations...........0935
number of c1 + SWARM Spectra.....5
number of polarizations..........1: XX--non polarization
number of receivers..............2: rx1->340, rx2->400
number of sidebands..............2: lsb & usb
number of baselines..............28
number of antennas...............8
number of channels...............65537
solving for antenna-based Tsys...
Segmentation fault (core dumped)
Reading USB data -
############################################################################
# Welcome to the Smithonian Astrophysical Observatory using swarm2casa - #
# A Pipeline: Converting SMA SWARM Data to CASA MeasurementSet: #
# swarm2read .......................... DRX version 1.1.1-beta: 2018-09-10 #
############################################################################
Get pathname, input- and output-filenames, sbidx, optidx ......
Handling USB data -
Warning: Applying no online flagging and no Tsys ...
wideband patch................swarmDrxP version 1.4.2-beta: 2018-09-03
*********************************
* Observing Date: 2018 Oct 02 *
*********************************
principal investigator...........SMA
Geocentrical coordinates (meter):
SMA-ANTID x y z = 1 -5.7024 -18.9838 15.6098
SMA-ANTID x y z = 2 -0.5089 -25.1506 1.2805
SMA-ANTID x y z = 3 0.0000 0.0000 0.0000
SMA-ANTID x y z = 4 2.7356 -23.7429 -7.7552
SMA-ANTID x y z = 5 1.9559 -7.4637 -5.5016
SMA-ANTID x y z = 6 -17.9164 -59.5564 30.0692
SMA-ANTID x y z = 7 -4.4426 -10.0932 12.2381
SMA-ANTID x y z = 8 4.4421 -63.8724 -21.8370
handling header variables........
number of integrations...........0935
number of c1 + SWARM Spectra.....5
number of polarizations..........1: XX--non polarization
number of receivers..............2: rx1->340, rx2->400
number of sidebands..............2: lsb & usb
number of baselines..............28
number of antennas...............8
number of channels...............65537
solving for antenna-based Tsys...
Segmentation fault (core dumped)
=========================================
The start-up time of CASA may vary
depending on whether the shared libraries
are cached or not.
=========================================
IPython 5.1.0 -- An enhanced Interactive Python.
CASA 5.3.0-143 -- Common Astronomy Software Applications
--> CrashReporter initialized.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN importuvfits::utils::verify Argument fitsfile failed to verify.
2018-10-24 18:09:25 WARN importuvfits::utils::verify Some arguments failed to verify!
2018-10-24 18:09:25 WARN concat::utils::verify Argument vis failed to verify.
2018-10-24 18:09:25 WARN concat::utils::verify Some arguments failed to verify!
hit return-key to listobs&plotms check the dual rx data: SMAtest0.ms
2018-10-24 18:09:31 WARN listobs::utils::verify Argument vis failed to verify.
2018-10-24 18:09:31 WARN listobs::utils::verify Some arguments failed to verify!
2018-10-24 18:09:31 SEVERE plotms:::: Input file not found:
2018-10-24 18:09:31 SEVERE plotms::::+ /data4/tkaminsk/SMAdata/CKVulSurvey/band7subcom2/SMAtest0.ms
hit return-key to quit the script
A single CASA measurementSet data output is produced:
SMAtest0.ms
Done, congratulation! exit from the script!
Wed Oct 24 14:12:51 EDT 2018
Tomasz (Tomek) Kaminski
SubMillimeter Array fellow
* * *
Harvard-Smithsonian
Center for Astrophysics
60 Garden Street, MS 78
Cambridge, MA 02138