Details on Jobs in the High-Memory Queues that Produced a Warning

Details on Jobs that Produced a Warning

jobID.tID jobName user queue - mem_res max(vmem) - vmem avgmem cpu age eff. nslots ------------------------------------------------------------------------------------------------------------------------ 11481231.243 AssembleBarcode breusingc mThM.q - 256.0G > 213.639G - 0.378G 211.410G 33.0h 3.0d 2.8% 16/mthread 11481232.26 metaspades breusingc mThM.q - 0.0G << 2.916G - 2.916G 2.835G 95.5d 6.0d 99.6% 16/mthread 11481232.53 metaspades breusingc mThM.q - 0.0G << 5.448G - 5.448G 5.366G 91.4d 5.8d 99.3% 16/mthread 11481232.62 metaspades breusingc mThM.q - 0.0G << 2.916G - 2.916G 2.835G 90.1d 5.7d 99.4% 16/mthread 11481232.80 metaspades breusingc mThM.q - 0.0G << 5.448G - 5.448G 5.366G 85.0d 5.3d 99.3% 16/mthread 11481232.82 metaspades breusingc mThM.q - 0.0G << 5.448G - 5.448G 5.366G 83.9d 5.3d 99.6% 16/mthread 11481232.87 metaspades breusingc mThM.q - 0.0G << 4.666G - 4.666G 4.584G 81.9d 5.2d 99.2% 16/mthread 11481232.107 metaspades breusingc mThM.q - 0.0G << 22.733G - 12.479G 12.191G 5.0d 4.8d 6.6% 16/mthread 11481232.108 metaspades breusingc mThM.q - 0.0G << 5.698G - 5.698G 5.616G 75.8d 4.8d 99.4% 16/mthread 11481232.133 metaspades breusingc mThM.q - 0.0G << 1.651G - 1.651G 1.570G 70.0d 4.4d 99.6% 16/mthread 11481232.135 metaspades breusingc mThM.q - 0.0G << 3.166G - 3.166G 3.085G 69.6d 4.4d 99.3% 16/mthread 11481232.142 metaspades breusingc mThM.q - 0.0G << 5.448G - 5.448G 5.365G 68.0d 4.3d 99.6% 16/mthread 11481232.157 metaspades breusingc mThM.q - 0.0G << 5.698G - 5.698G 5.616G 62.7d 3.9d 99.5% 16/mthread 11481232.175 metaspades breusingc mThM.q - 0.0G << 2.916G - 2.916G 2.835G 54.2d 3.4d 99.6% 16/mthread 11481232.178 metaspades breusingc mThM.q - 0.0G << 5.698G - 5.698G 5.612G 52.6d 3.3d 99.4% 16/mthread 11481232.183 metaspades breusingc mThM.q - 0.0G << 2.916G - 2.916G 2.835G 49.8d 3.1d 99.6% 16/mthread 11481232.188 metaspades breusingc mThM.q - 0.0G << 5.448G - 5.448G 5.361G 45.4d 2.8d 99.5% 16/mthread 11481232.207 metaspades breusingc mThM.q - 0.0G << 3.651G - 3.651G 3.568G 27.9d 1.8d 99.3% 16/mthread 11481232.227 metaspades breusingc mThM.q - 0.0G << 328.995G - 328.995G 84.231G 6.3d 17.0h 56.1% 16/mthread 11481232.230 metaspades breusingc mThM.q - 0.0G << 59.123G - 51.635G 40.733G 8.5d 13.3h 96.5% 16/mthread 11481232.233 metaspades breusingc mThM.q - 0.0G << 30.542G - 19.252G 12.957G 13.3h 0.9h 94.2% 16/mthread 11732521.2 repeatModelClas medeirosi mThM.q - 120.0G >> 1.587G - 0.591G 0.273G 7.0d 3.9d 45.2% 4/mthread 11732521.19 repeatModelClas medeirosi mThM.q - 120.0G >> 1.619G - 0.551G 0.290G 11.4d 3.9d 73.3% 4/mthread 11732521.22 repeatModelClas medeirosi mThM.q - 120.0G >> 1.752G - 0.609G 0.296G 11.6d 3.9d 75.3% 4/mthread 11732521.25 repeatModelClas medeirosi mThM.q - 120.0G >> 1.951G - 0.618G 0.306G 10.0d 3.9d 64.8% 4/mthread 11766595.1 spades_array.jo collinsa mThM.q - 400.0G >> 2.637G - 2.160G 2.068G 18.3d 1.2d 99.5% 16/mthread 11766595.2 spades_array.jo collinsa mThM.q - 400.0G >> 2.410G - 1.910G 1.824G 18.3d 1.2d 99.5% 16/mthread 11766595.4 spades_array.jo collinsa mThM.q - 400.0G >> 1.660G - 1.660G 1.570G 18.3d 1.2d 99.6% 16/mthread 11766595.5 spades_array.jo collinsa mThM.q - 400.0G >> 5.676G - 5.676G 5.572G 18.3d 1.2d 99.3% 16/mthread 11766595.6 spades_array.jo collinsa mThM.q - 400.0G >> 6.207G - 6.207G 6.090G 18.3d 1.2d 99.3% 16/mthread 11766595.10 spades_array.jo collinsa mThM.q - 400.0G >> 4.676G - 2.926G 2.896G 18.3d 1.2d 99.3% 16/mthread 11766595.13 spades_array.jo collinsa mThM.q - 400.0G >> 10.769G - 10.769G 10.654G 18.2d 1.2d 99.1% 16/mthread 11766595.21 spades_array.jo collinsa mThM.q - 400.0G >> 6.957G - 6.957G 6.858G 17.9d 1.1d 99.2% 16/mthread 11766504.1 sortmerna bourkeb mThM.q - 256.0G >> 10.188G - 6.750G 6.623G 5.8d 1.4d 53.9% 8/mthread 11769355.1 ribodetector bourkeb mThM.q - 256.0G >> 183.193G - 182.562G 17.874G 2.6d 8.5h 91.6% 8/mthread 11043155.1 Delphinidae_IQT mcgowenm lThM.q - 900.0G >> 59.526G - 59.526G 35.917G 31.1d 31.2d 16.6% 6/mthread 11769557.1 AA80 uribeje lThM.q - 200.0G >> 8.683G - 8.446G 8.488G 8.6h 2.9h 29.9% 10/mthread 11757123.1 raxml_hmem coellogarrid lThM.q - 120.0G >> 17.094G - 16.873G 16.827G 118.6d 3.0d 99.3% 40/mthread 11710203.1 USVI byerlyp lThM.q - 10.0G >> 0.987G - 0.921G 0.686G 4.1d 4.2d 33.2% 3/mthread 11730444.1 raxml_hmem coellogarrid lThM.q - 120.0G >> 46.900G - 46.900G 46.768G 154.7d 3.9d 99.3% 40/mthread 11049129.1 xvcf2 uribeje uThM.q - 400.0G >> 207.762G - 206.187G 140.088G 91.2d 23.0d 49.5% 8/mthread 11049128.1 xvcf2 uribeje uThM.q - 400.0G >> 121.582G - 120.953G 92.120G 73.3d 23.0d 39.8% 8/mthread

A warning is generated if either: • too much or too little memory is reserved: mem_res versus max(vmem); or • the job efficiency is too low or is too high. Click on the link under the jobID.tID heading to view the job's corresponding graph.

The quantity mem_res is the amount of memory reserved for the job, while max(vmem) is the maximum amount of memory a job has used (so far); to optimize the cluster's memory usage, these two numbers should be similar.

The job efficiency, eff., is the amount of CPU used so far divided by the product of the age by the number of slots. • A low efficiency means that the job is not using all the allocated CPUs (slots); • a value above 100% means that the job is using more CPUs cycles (threads) than the requested number of slots (nslots).

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