Details on Jobs in the High-Memory Queues that Produced a Warning

Details on Jobs that Produced a Warning

jobID.tID jobName user queue - mem_res max(vmem) - vmem avgmem cpu age eff. nslots ------------------------------------------------------------------------------------------------------------------------ 14418471.379 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.971G 2.816G 15.6h 15.6h 99.5% 1 14418471.381 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.971G - 2.971G 2.830G 15.4h 15.5h 99.6% 1 14418471.386 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.969G - 2.969G 2.822G 15.0h 15.1h 99.6% 1 14418471.399 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.974G - 2.973G 2.818G 13.8h 13.9h 99.6% 1 14418471.402 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.969G - 2.968G 2.766G 12.4h 12.4h 99.6% 1 14418471.407 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.971G 2.838G 10.6h 10.7h 99.7% 1 14418471.411 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.970G - 2.969G 2.718G 9.4h 9.5h 99.5% 1 14418471.412 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.974G - 2.974G 2.814G 9.0h 9.0h 99.6% 1 14418471.413 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.975G - 2.974G 2.706G 8.9h 8.9h 99.5% 1 14418471.414 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.965G - 2.964G 2.760G 8.4h 8.4h 99.6% 1 14418471.415 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.971G 2.674G 8.0h 8.1h 99.5% 1 14418471.416 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.973G - 2.972G 2.744G 7.8h 7.8h 99.5% 1 14418471.417 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.971G - 2.970G 2.729G 7.6h 7.6h 99.6% 1 14418471.418 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.973G - 2.972G 2.695G 7.4h 7.4h 99.6% 1 14418471.419 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.971G 2.769G 6.7h 6.7h 99.6% 1 14418471.420 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.974G - 2.972G 2.760G 6.5h 6.6h 99.7% 1 14418471.421 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.971G - 2.970G 2.751G 6.5h 6.5h 99.4% 1 14418471.422 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.974G - 2.974G 2.584G 6.5h 6.5h 99.5% 1 14418471.423 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.976G - 2.975G 2.768G 6.4h 6.4h 99.7% 1 14418471.424 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.975G - 2.974G 2.766G 6.4h 6.4h 99.4% 1 14418471.425 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.959G - 2.958G 2.759G 6.2h 6.2h 99.4% 1 14418471.426 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.972G 2.754G 6.1h 6.1h 99.6% 1 14423581.1 assT023 peresph mThM.q - 120.0G >> 71.472G - 0.986G 29.328G 25.5h 23.1h 18.4% 6/mthread 14421513.1 ass04 peresph mThM.q - 60.0G > 48.356G - 0.463G 14.150G 2.3d 2.8d 14.0% 6/mthread 14424935.1 assT089max peresph mThM.q - 300.0G >> 143.511G - 2.598G 61.807G 1.8d 13.5h 31.5% 10/mthread 14421521.1 ass12 peresph mThM.q - 60.0G >> 33.515G - 0.338G 12.634G 2.8d 2.8d 17.0% 6/mthread 14423579.1 assId009 peresph mThM.q - 120.0G >> 72.634G - 0.861G 34.704G 21.2h 23.1h 15.3% 6/mthread 14421523.1 ass14 peresph mThM.q - 60.0G > 48.421G - 0.369G 14.632G 3.2d 2.8d 19.4% 6/mthread 14423583.1 assT420 peresph mThM.q - 120.0G >> 71.500G - 0.986G 29.498G 18.8h 23.1h 13.6% 6/mthread 14421504.1 ass01 peresph mThM.q - 60.0G >> 36.499G - 0.517G 14.717G 2.3d 2.8d 13.7% 6/mthread 14423642.1 Full_Rep1 peresph mThM.q - 120.0G >> 85.613G - 0.658G 28.819G 20.1h 22.5h 14.8% 6/mthread 14421512.1 ass03 peresph mThM.q - 60.0G >> 25.487G - 0.338G 9.474G 2.9d 2.8d 17.8% 6/mthread 14421525.1 ass16 peresph mThM.q - 60.0G >> 40.914G - 0.310G 13.763G 2.2d 2.8d 13.1% 6/mthread 14423643.1 Full2_Rep2 peresph mThM.q - 120.0G >> 51.345G - 1.152G 20.450G 28.4h 22.5h 21.0% 6/mthread 14423580.1 assId051 peresph mThM.q - 120.0G >> 73.376G - 1.371G 32.601G 33.4h 23.1h 24.1% 6/mthread 14419930.1 Step3_ribodetec bourkeb mThM.q - 256.0G >> 183.365G - 181.222G 17.597G 25.5d 3.8d 83.0% 8/mthread 14421515.1 ass06 peresph mThM.q - 60.0G > 50.667G - 0.377G 14.361G 2.4d 2.8d 14.5% 6/mthread 14424934.1 assT185max peresph mThM.q - 300.0G >> 170.488G - 3.049G 70.753G 2.6d 13.6h 46.6% 10/mthread 14422244.1 ass11rep peresph mThM.q - 120.0G > 113.745G - 0.377G 25.906G 2.7d 1.9d 23.6% 6/mthread 14421517.1 ass08 peresph mThM.q - 60.0G >> 43.834G - 0.996G 14.752G 2.6d 2.8d 15.6% 6/mthread 14418418.1 bpp_A11_williso figueiroh mThM.q - 128.0G >> 0.273G - 0.273G 0.255G 7.0d 7.0d 12.5% 8/mthread 14421516.1 ass07 peresph mThM.q - 60.0G >> 43.039G - 0.668G 13.993G 2.2d 2.8d 13.3% 6/mthread 14421511.1 ass02 peresph mThM.q - 60.0G > 53.762G - 0.377G 10.915G 3.1d 2.8d 18.4% 6/mthread 14424969.1 Step4_de_novo_a bourkeb mThM.q - 256.0G >> 200.772G - 7.281G 3.927G 12.0h 6.0h 24.8% 8/mthread 14422996.1 loco-pipe-N187- longk mThM.q - 640.0G >> 138.825G - 15.930G 11.695G 24.9d 1.7d 44.8% 32/mthread 14421518.1 ass09 peresph mThM.q - 60.0G >> 39.513G - 19.337G 11.513G 4.0d 2.8d 23.9% 6/mthread 14405067.1 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 25.539G - 25.539G 25.072G 12.9d 12.9d 99.8% 1 14405069.3 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 27.673G - 27.673G 27.123G 12.9d 12.9d 99.8% 1 14405075.9 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 19.172G - 19.172G 18.671G 12.9d 12.9d 99.8% 1 14424971.1 BRNO_sfs2 byerlyp lThM.q - 100.0G >> 54.386G - 49.220G 53.707G 15.3h 5.9h 51.4% 5/mthread 14405252.55 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 61.271G - 61.271G 60.431G 12.6d 12.6d 99.7% 1 14405246.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.467G - 49.375G 48.720G 12.6d 12.6d 99.7% 1 14405257.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.464G - 49.464G 48.807G 12.6d 12.6d 99.7% 1 14405253.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.742G - 52.742G 52.055G 12.6d 12.6d 99.7% 1 14423599.1 sapdescript santosbe lThM.q - 320.0G >> 51.437G - 0.649G 14.355G 27.4h 23.0h 14.9% 8/mthread 14405234.107 CJS_nbraw_nc suttonm lThM.q - 64.0G >> 49.529G - 49.438G 48.748G 12.7d 12.7d 99.7% 1 14422897.2 earlgrey zhangy lThM.q - 192.0G >> 16.424G - 1.301G 1.179G 19.2d 1.8d 91.2% 12/mthread 14422897.7 earlgrey zhangy lThM.q - 192.0G >> 6.294G - 1.810G 1.238G 19.1d 1.8d 91.0% 12/mthread 14422897.8 earlgrey zhangy lThM.q - 192.0G > 183.604G - 0.677G 5.242G 6.3d 1.8d 30.0% 12/mthread 14422897.11 earlgrey zhangy lThM.q - 192.0G > 177.728G - 1.790G 2.725G 9.4d 1.8d 44.8% 12/mthread 14405240.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.949G - 64.949G 64.086G 12.6d 12.6d 99.7% 1 14405242.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.741G - 52.741G 52.059G 12.6d 12.6d 99.7% 1 14424975.1 run_S5 szieba lThM.q - 1.0G << 138.292G - 138.292G 2.702G 8.5d 5.4h 75.2% 50/mthread 14423601.1 sapdescript santosbe lThM.q - 320.0G >> 21.712G - 0.899G 9.586G 15.2h 23.0h 8.2% 8/mthread 14423603.1 sapdescript santosbe lThM.q - 320.0G >> 36.136G - 0.899G 13.729G 18.6h 23.0h 10.1% 8/mthread 14423623.1 sapdescript santosbe lThM.q - 320.0G >> 43.863G - 0.898G 20.354G 23.4h 17.3h 16.9% 8/mthread 14424970.1 sote_sfs2 byerlyp lThM.q - 100.0G >> 55.575G - 55.575G 42.515G 15.9h 5.9h 53.6% 5/mthread 14405142.85 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 26.225G - 26.225G 25.752G 12.8d 12.9d 99.7% 1 14405159.104 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 34.124G - 34.124G 27.275G 12.8d 12.9d 99.7% 1 14423604.1 sapdescript santosbe lThM.q - 320.0G >> 45.398G - 0.899G 14.677G 12.4h 23.0h 6.7% 8/mthread 14423619.1 sapdescript santosbe lThM.q - 320.0G >> 24.030G - 0.648G 11.946G 15.7h 18.5h 10.7% 8/mthread 14423607.1 sapdescript santosbe lThM.q - 320.0G >> 23.511G - 0.899G 8.486G 14.1h 22.2h 8.0% 8/mthread 14405165.110 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 37.120G - 37.120G 36.548G 12.8d 12.9d 99.6% 1 14405250.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.886G - 64.886G 64.114G 12.6d 12.6d 99.7% 1 14424973.1 BRNO_sfs2 byerlyp lThM.q - 100.0G >> 54.386G - 54.386G 54.073G 15.8h 5.5h 57.2% 5/mthread 14405247.108 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 57.371G - 57.371G 56.676G 12.6d 12.6d 99.7% 1 14405256.100 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 53.216G - 53.216G 52.498G 12.6d 12.6d 99.7% 1 14423586.1 sapdescript santosbe lThM.q - 320.0G >> 32.265G - 0.899G 11.153G 13.9h 23.0h 7.6% 8/mthread 14423594.1 sapdescript santosbe lThM.q - 320.0G >> 42.065G - 0.899G 14.391G 16.9h 23.0h 9.2% 8/mthread 14423602.1 sapdescript santosbe lThM.q - 320.0G >> 32.792G - 0.899G 14.158G 14.5h 23.0h 7.9% 8/mthread 14423584.1 sapdescript santosbe lThM.q - 320.0G >> 64.960G - 0.899G 33.494G 19.2h 23.0h 10.4% 8/mthread 14405284.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.866G - 52.866G 52.028G 12.4d 12.4d 99.7% 1 14405288.100 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 53.216G - 53.216G 52.458G 12.4d 12.4d 99.8% 1 14405289.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.531G - 49.437G 48.680G 12.4d 12.4d 99.8% 1 14405281.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.949G - 64.949G 63.924G 12.4d 12.4d 99.8% 1 14405290.108 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 57.433G - 57.433G 56.525G 12.4d 12.4d 99.8% 1 14423588.1 sapdescript santosbe lThM.q - 320.0G >> 35.132G - 0.645G 15.219G 33.5h 23.0h 18.2% 8/mthread 14405283.55 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 61.930G - 61.852G 60.896G 12.4d 12.4d 99.8% 1

A warning is generated if either: • too much or too little memory is reserved: mem_res versus max(vmem); or • the job efficiency is too low or is too high. Click on the link under the jobID.tID heading to view the job's corresponding graph.

The quantity mem_res is the amount of memory reserved for the job, while max(vmem) is the maximum amount of memory a job has used (so far); to optimize the cluster's memory usage, these two numbers should be similar.

The job efficiency, eff., is the amount of CPU used so far divided by the product of the age by the number of slots. • A low efficiency means that the job is not using all the allocated CPUs (slots); • a value above 100% means that the job is using more CPUs cycles (threads) than the requested number of slots (nslots).

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