Details on Jobs in the High-Memory Queues that Produced a Warning

Details on Jobs that Produced a Warning

jobID.tID jobName user queue - mem_res max(vmem) - vmem avgmem cpu age eff. nslots ------------------------------------------------------------------------------------------------------------------------ 14418471.69 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.968G - 2.967G 2.797G 15.3h 15.3h 99.6% 1 14418471.75 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.973G - 2.972G 2.815G 12.6h 12.6h 99.7% 1 14418471.77 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.974G - 2.973G 2.802G 10.1h 10.2h 99.6% 1 14418471.78 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.971G 2.819G 9.9h 9.9h 99.5% 1 14418471.80 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.970G - 2.969G 2.744G 6.3h 6.3h 99.5% 1 14418471.81 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.972G - 2.971G 2.739G 6.2h 6.2h 99.6% 1 14418471.82 SRR_16S-to-Gree palmerem mThM.q - 300.0G >> 2.973G - 2.973G 2.762G 6.1h 6.2h 99.4% 1 14418986.1 nf-modern_align klinsawatw mThM.q - 16.0G >> 12.759G - 12.383G 12.261G 2.0d 16.0h 153.0% 2/mthread 14418991.1 nf-modern_align klinsawatw mThM.q - 16.0G >> 12.638G - 12.285G 12.148G 2.1d 16.0h 154.3% 2/mthread 14418983.1 nf-modern_align klinsawatw mThM.q - 16.0G < 19.372G - 13.381G 13.251G 2.0d 16.0h 146.8% 2/mthread 14418982.1 nf-modern_align klinsawatw mThM.q - 16.0G > 13.964G - 13.571G 13.456G 1.9d 16.0h 144.2% 2/mthread 14418990.1 nf-modern_align klinsawatw mThM.q - 16.0G > 13.758G - 13.612G 13.261G 2.0d 16.0h 152.6% 2/mthread 14418984.1 nf-modern_align klinsawatw mThM.q - 16.0G > 13.929G - 13.563G 13.434G 2.1d 16.0h 158.4% 2/mthread 14419105.1 Step2_kraken2_e bourkeb mThM.q - 800.0G >> 5.980G - 2.621G 3.238G 10.1h 10.2h 6.2% 16/mthread 14418418.1 bpp_A11_williso figueiroh mThM.q - 128.0G >> 0.273G - 0.273G 0.255G 1.6d 1.6d 12.5% 8/mthread 14405067.1 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 25.539G - 25.539G 25.026G 7.5d 7.5d 99.8% 1 14405069.3 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 27.673G - 27.673G 27.061G 7.5d 7.5d 99.8% 1 14405075.9 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 19.172G - 19.172G 18.645G 7.5d 7.5d 99.8% 1 14395137.6 earlgrey zhangy lThM.q - 192.0G >> 36.889G - 1.570G 1.122G 141.0d 12.3d 95.2% 12/mthread 14395137.8 earlgrey zhangy lThM.q - 192.0G >> 3.563G - 1.278G 1.044G 142.7d 12.3d 96.4% 12/mthread 14405252.55 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 61.271G - 61.271G 60.152G 7.2d 7.3d 99.7% 1 14419439.1 earlgrey zhangy lThM.q - 240.0G >> 4.789G - 2.782G 1.412G 10.2h 1.4h 59.8% 12/mthread 14405246.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.467G - 49.375G 48.533G 7.2d 7.3d 99.7% 1 14405257.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.464G - 49.464G 48.618G 7.2d 7.3d 99.7% 1 14405253.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.742G - 52.742G 51.844G 7.2d 7.3d 99.7% 1 14405234.107 CJS_nbraw_nc suttonm lThM.q - 64.0G >> 49.529G - 49.438G 48.583G 7.3d 7.3d 99.7% 1 14405240.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.949G - 64.949G 63.790G 7.2d 7.3d 99.7% 1 14405242.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.741G - 52.741G 51.852G 7.2d 7.3d 99.7% 1 14405145.89 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 24.489G - 24.489G 24.001G 7.5d 7.5d 99.7% 1 14405121.61 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 17.256G - 17.256G 16.805G 7.5d 7.5d 99.6% 1 14405158.103 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 21.920G - 21.920G 21.441G 7.5d 7.5d 99.7% 1 14405142.85 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 26.225G - 26.225G 25.701G 7.5d 7.5d 99.7% 1 14405159.104 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 34.124G - 34.124G 22.652G 7.5d 7.5d 99.7% 1 14405165.110 CJS_nbraw_nc suttonm lThM.q - 48.0G >> 37.120G - 37.120G 36.471G 7.5d 7.5d 99.6% 1 14405250.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.886G - 64.886G 63.840G 7.2d 7.3d 99.7% 1 14405247.108 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 57.371G - 57.371G 56.460G 7.2d 7.3d 99.7% 1 14405256.100 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 53.216G - 53.216G 52.310G 7.2d 7.3d 99.7% 1 14405284.64 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 52.866G - 52.866G 51.791G 7.0d 7.1d 99.7% 1 14405288.100 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 53.216G - 53.216G 52.234G 7.0d 7.1d 99.8% 1 14405289.107 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 49.531G - 49.437G 48.457G 7.0d 7.1d 99.8% 1 14405281.35 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 64.949G - 64.949G 63.496G 7.0d 7.1d 99.8% 1 14405290.108 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 57.433G - 57.433G 56.187G 7.0d 7.1d 99.8% 1 14405283.55 CJS_nbraw_nc suttonm lThM.q - 96.0G >> 61.930G - 61.852G 60.521G 7.0d 7.1d 99.7% 1 14418117.1 beast2_tree uribeje uThM.q - 128.0G > 112.993G - 112.993G 112.965G 69.2d 2.3d 380.6% 8/mthread 14418118.1 beast2_tree uribeje uThM.q - 128.0G > 113.056G - 113.056G 113.028G 65.4d 2.3d 359.7% 8/mthread 14418119.1 beast2_tree uribeje uThM.q - 128.0G > 115.424G - 115.424G 115.397G 71.6d 2.3d 394.5% 8/mthread

A warning is generated if either: • too much or too little memory is reserved: mem_res versus max(vmem); or • the job efficiency is too low or is too high. Click on the link under the jobID.tID heading to view the job's corresponding graph.

The quantity mem_res is the amount of memory reserved for the job, while max(vmem) is the maximum amount of memory a job has used (so far); to optimize the cluster's memory usage, these two numbers should be similar.

The job efficiency, eff., is the amount of CPU used so far divided by the product of the age by the number of slots. • A low efficiency means that the job is not using all the allocated CPUs (slots); • a value above 100% means that the job is using more CPUs cycles (threads) than the requested number of slots (nslots).

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